G52782


Basic Information

Item Value
gene id G52782
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15836989 ~ 15837801 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66056
aaaaaaatctttattgcAGGACAAGACACTGGTGTGCTGTACAACAGGATGAATGGGCAGAGGCGAGGTGGAGGAGACTGGGAAAGGGTGAGAGAAGTGCATCTCCCTTATTTTaaactccctccctctctcatatatatatccAAATTTACAACACTGGTCTTCAATCTAtaggaatacaaaatggaagaaaaacaaaaacaaaaaaaacaatatacatttatacagacAGAATGGCACCAACTTACCCCCACAGGCAGAGTTGAATcttcaaaaattaaaacaaaaacaaaaatgcacttCCTATAACCTATAATCACTGGAGACTGTCAGTCAGTTGTGAACAGTGGAACAGTTTATAACCTAGTACAGTATAGTCCAGCAGGGTTTCCAGCCCTGGTCTTCGACAgatggagaccctgctgtacttgGTCTCTCCAGGCCCAGGGCTAAAGACTCTGCTGTACAATAGCTATCTGGGACCTTCTTTTACCCTATTCCCTCACCTCCCCTCGCTCAGTACCCTTCCATGGGGGGCTCCATCTTATACCCATTCTCATTGGACAGGTACCCCTCCCCCGACTGTAGGGACTCCTGGTCCATCAGGCCATCCTGGCTGTCCTCCTGAGGGGGGCCGTCACCACTCAGGCTCCCCCCGTCCTGCAGGAgcaagggagggaggaggagagaggaggaggaagcggcactggcagggaggaggaggctctgctgctgctgctgctgccggtCCTCCCTCcgctcccctctctccctttctcctctATCTCTCTTGTGCTcacgctccctctctct

Function

GO:

id name namespace
GO:0015629 actin cytoskeleton cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66056 True 813 TUCP 0.50 1 15836989 15837801

Neighbor

gene id symbol gene type direction distance location
AMCG00008962 NA coding downstream 6360 15827700 ~ 15830629 (-)
AMCG00008963 slc1a9,LOC107578863,LOC108434930,LOC107551162,LOC105012932,LOC107680867 coding downstream 35616 15788545 ~ 15801373 (-)
AMCG00008959 NA coding downstream 151939 15667816 ~ 15685050 (-)
AMCG00008958 tnnt1,LOC107097207,LOC107689677,LOC108427325 coding downstream 176493 15649544 ~ 15660496 (-)
AMCG00008956 NA coding downstream 240667 15542462 ~ 15596322 (-)
AMCG00008961 NA coding upstream 15413 15853214 ~ 15857199 (-)
AMCG00008968 NA coding upstream 57887 15895688 ~ 15898166 (-)
AMCG00008973 NA coding upstream 378737 16216538 ~ 16233132 (-)
AMCG00008974 LOC107730758,LOC105891716 coding upstream 436003 16273804 ~ 16289372 (-)
AMCG00008977 LOC106517428,LOC102198306 coding upstream 455515 16293316 ~ 16298256 (-)
G52774 NA non-coding downstream 14771 15821186 ~ 15822218 (-)
G52692 prmt1,LOC107729532,LOC107658485 non-coding downstream 323766 15507248 ~ 15513223 (-)
G52676 NA non-coding downstream 359052 15415945 ~ 15477937 (-)
G52683 NA non-coding downstream 408338 15426916 ~ 15428651 (-)
G52666 NA non-coding downstream 552721 15280896 ~ 15284268 (-)
G52793 NA non-coding upstream 21722 15859523 ~ 15863705 (-)
G52794 NA non-coding upstream 27947 15865748 ~ 15865986 (-)
G52808 NA non-coding upstream 68072 15905873 ~ 15908407 (-)
G52809 NA non-coding upstream 70863 15908664 ~ 15910151 (-)
G52812 NA non-coding upstream 92774 15930575 ~ 15931134 (-)
AMCG00008957 NA other downstream 197859 15603825 ~ 15639130 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other downstream 331472 15469674 ~ 15505517 (-)
AMCG00008934 NA other downstream 779783 15032347 ~ 15057206 (-)
AMCG00008923 NA other downstream 971001 14840707 ~ 14865988 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other downstream 1121667 14693830 ~ 14715322 (-)
G52834 NA other upstream 119866 15957667 ~ 15963617 (-)
AMCG00008971 NA other upstream 225753 16063554 ~ 16073935 (-)
G52951 NA other upstream 566909 16404710 ~ 16405126 (-)
G53017 NA other upstream 775423 16613224 ~ 16614461 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other upstream 985994 16823795 ~ 16913299 (-)

Expression


Co-expression Network