G52692 (prmt1,LOC107729532,LOC107658485)


Basic Information

Item Value
gene id G52692
gene name prmt1,LOC107729532,LOC107658485
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15507248 ~ 15513223 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65933
ttacatttcctgtttattaaaaaaaaaaaaaaaatcatcgaAGCAGCAAAACCATTTAACATGGACAAACTGTGACCTCCCTCTTGCtcttcccttctccctctccactctcccccccctccctccataATAAATTAGGGAAGAGGGCAGAGGGGGAGAGACTGACAAACCCCACTACAATATAAAACGCTGACTCTACTCACAGACTGGTAAAAAGGAGTTATTGTACAGTGAGTAAGTACTGTAGGACTTCCTCTTgcaaatttaaacatttgatcatttcaaattattctacagggggaggggggaaaccAAAAATTAACTACACACACTATAGTAGTACTAAGGCGACCAGAGTGCTTGTTGTGAACAGCTGAACTATGAGATCACGGTCATCTGGTGACCCCAACTGCAGGCCCTGGCAGGGGACAGTGCTGTGGTCAATAGAGCCAGTAACTGACCAACCCACACACTAATTCTCAAATTCTCCAAAGTGTGGTGGAAGGTAACCAGGCACACAGCTGGCATACTGATATGGTCATTGTGGGGTGTATAACACGAGATTGGTGTGCGAATCTGCAGGTGTATGTATGACTGGTAGCAAGCATTAGTGCGTCtccatttgtgtgtctgtcGGTGTGTGGCGCAAATACCAAGGTCTTAAAAAGCTACAGCTTATACaccaaaattaattataatacgATTCTGACTAGACGAGATGAGAAATTGCATTCTGGGAAATTGTGCACAATaatgtgtgggggggaggtgggggcagCTAGGGAGCTGCGGAGACTTGGAACTCGATGGATCCAAATTCTTTGATACTAACACAGACGAGAGGGGCACACAaataaaaggacaaaaaaaaattatatatatattgctccTCTACTCCTCCAGCCCACATGcatctctcctccccctccctctgtaACCATTATTCCACCTCTCCATGCATCTAGTTTGAGTGTACATCTCTCTATTCAATTCTTGTGTGCAGTttgctctcctcctcccctcGGCCAGGTCTCCTGCACCCTCCTCTTCCTCTAGCGCATCCTGTACTCTGATGTCTTCGACACCTCGCACAGCTGTCCCTTGAAGTCAATGTCCACATTGAAGTCCAGATCAcgGTTGTTCTTGACATTGGGCTTCATGCTGATCGTTCCAAATATCTCCTCGCCCGTCTTCACAGTCAGGTAGTCATCCAGGTAGAACACTGTCTGCTTCCAGTGAGTGTAGGGGGACTCAGGACTGGTTGAGAAGCCGGTCCTCTTGTGGCAGCGTGTGAACTCAATGTTGAAGTAGGTGACGAGCGCGTGGATGTAGTCGTTCCTCTTCACCTGCAGGCAGAAGGGCGAGGTGAAGGACAGGTCCTCAATCTTCACTGTGTAGATATCCACCTCCTTGATGAGACATGCCGAAGACACCAGCTGTTTGGGGTCCACCACATCTACTAGAGGCTCCTTGATGGCTACGTCCTTAATGCAGGACATGTCAAACCCATAGACATTCTCCCACCAGTGGATCTTGTAGTCTTTATACTGGCGGTCCTCAATGGCAGTGACGTACAAAGTGGCTCTGTCAGGAAATATCAACCCATCTGGTTTcagcCACTTGTCCCTTGCGTAGATGACCGTATTGAGCATGGACTCGTAGAAGAGGCAGTAGCCCATCCACTCGGAGATGATGATATCCACCTTCTCCACTGGAAGTTCCACCTCCTCCACCTTTCCCTTGATAATCGTCACAACTGGAAAGGGAGAAAGTGTTACTATAGCAATTatacactgactggacactacaggacaACACTGACTTACCAACTGGACACCAAAACAAACCAGAACAAAGGGACACAGATGGGGGGGAAAAGAGGGACTGGACTCACTGTGGTCCAGTTTGTTGGCTTTAACAATCTTGACCGCGTAATCAGAGATGCTGGAGCACTCAATCTGAAAGAGACATGGCAGAGTGAGCACCACAATAACCGAGACATGACAAACACTGCCAGCATGTGCCCACACGTATGCACCAACAACGTCAAACGCACACATGTACTCTCAAACTTGCGTCCACTGGCAAACTCAACCTAATGACATTCTTGGCTCCAGCCACGCACAGACTTGACACATGAACAGACTTGACACTGACCCCGATGACCTTCTTGGCACCCGCCTTTGCAGCAAACATGCACAGGATGCCGGTGCCACTGCCCACGTCCAGCACCACACGGTCCCGGAACAGATGCTTGTTGTGGAACATAGAGTTCCTGTAGGTCAGTGTACGCACCTCATCTTTCAGCATCTCCTCATGAATGCCGAAGTGGGCGTAGGAGTCAAAGTAGTAATCCTTGGATGTCATGTCTTCTGCTGAGGGCTTCGCCGAGCTCTCCCCTACCTGGGAAACCTCCATACCAGAGCTCTCCGCCATTTCGAAAGTGTGTCTAGAGCCGGAAACGCGCACTCACTCACACGCGCCAGAGCAACCCTCGC

Function

symbol description
prmt1 Enables arginine N-methyltransferase activity. Acts upstream of or within convergent extension involved in gastrulation and histone H4-R3 methylation. Predicted to be active in nucleus. Is expressed in several structures, including adaxial cell; brain; heart; otic vesicle; and pleuroperitoneal region. Orthologous to human PRMT1 (protein arginine methyltransferase 1).

NR:

description
PREDICTED: protein arginine N-methyltransferase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65933 True 2498 lncRNA 0.49 8 15507248 15513223

Neighbor

gene id symbol gene type direction distance location
AMCG00008945 NA coding downstream 107127 15399579 ~ 15400121 (-)
AMCG00008944 NA coding downstream 116198 15372545 ~ 15391050 (-)
AMCG00008943 NA coding downstream 179103 15301842 ~ 15328145 (-)
AMCG00008942 NA coding downstream 302592 15202268 ~ 15204656 (-)
AMCG00008937 NA coding downstream 324682 15176616 ~ 15182566 (-)
AMCG00008950 NA coding upstream 1411 15514634 ~ 15528761 (-)
AMCG00008956 NA coding upstream 29239 15542462 ~ 15596322 (-)
AMCG00008958 tnnt1,LOC107097207,LOC107689677,LOC108427325 coding upstream 136321 15649544 ~ 15660496 (-)
AMCG00008959 NA coding upstream 154593 15667816 ~ 15685050 (-)
AMCG00008963 slc1a9,LOC107578863,LOC108434930,LOC107551162,LOC105012932,LOC107680867 coding upstream 275322 15788545 ~ 15801373 (-)
G52676 NA non-coding downstream 29311 15415945 ~ 15477937 (-)
G52683 NA non-coding downstream 78597 15426916 ~ 15428651 (-)
G52666 NA non-coding downstream 222980 15280896 ~ 15284268 (-)
G52621 NA non-coding downstream 268133 15238055 ~ 15239115 (-)
G52594 NA non-coding downstream 334882 15169322 ~ 15172366 (-)
G52774 NA non-coding upstream 307963 15821186 ~ 15822218 (-)
G52793 NA non-coding upstream 346300 15859523 ~ 15863705 (-)
G52794 NA non-coding upstream 352525 15865748 ~ 15865986 (-)
G52808 NA non-coding upstream 392650 15905873 ~ 15908407 (-)
G52809 NA non-coding upstream 395441 15908664 ~ 15910151 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other downstream 1731 15469674 ~ 15505517 (-)
AMCG00008934 NA other downstream 450042 15032347 ~ 15057206 (-)
AMCG00008923 NA other downstream 641260 14840707 ~ 14865988 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other downstream 791926 14693830 ~ 14715322 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other downstream 1523355 13938451 ~ 13983893 (-)
AMCG00008957 NA other upstream 90602 15603825 ~ 15639130 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other upstream 320817 15834040 ~ 15851810 (-)
G52782 NA other upstream 323766 15836989 ~ 15837801 (-)
G52834 NA other upstream 444444 15957667 ~ 15963617 (-)
AMCG00008971 NA other upstream 550331 16063554 ~ 16073935 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G12345 NA non-coding NC_048565.1 CM023219.2 13542549 ~ 13542769 (-)
rainbow trout (Oncorhynchus mykiss) G2240359 prmt1 non-coding NC_050570.1 CM025857.1 45131883 ~ 45139311 (-)
mexican tetra (Astyanax mexicanus) G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 unknown NC_035898.1 CM008301.1 15272755 ~ 15278437 (-)