AMCG00008943


Basic Information

Item Value
gene id AMCG00008943
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15301842 ~ 15328145 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008943
cagaggCAGTATCATGGCGGAGGCTCACCAGGCGGTGGCGTTCCAGTTTACCATTACCCCTGAGGGCATCGACCTGCAACTCAGTCACCAGGCCTTGCGGCAGGTCTACCTGTCAGGGCTGCGGTCCTGGCGGAAGAGGCTCATCAGGGTCAAGAACAGTGTGATTACAGGCGTGTACCCTGCTAGCCCCTCCTCCTGGCTTTTTGTTGTCATAGCGATCCTGGCCACCATGTACACACGCAGTGACCCCTCCATGGGCCTCATCGCCAAGATACAGGAGCACCTACCTGTCAGtcaGTCCCTCTCCCCACAGTCCCAGACAGTGCTGTCTGCGGTGCTGTTTTCTACTGCGCTGTGGCTCTCTCTGATCCTCACCATGCGCCTCATCCTAAAGCAGCTACTGTCCTACCACCGCTGGATGTTTGAGCAGCACGGCCGCATGAGCAACACCACCCGCGTCTGGCTGTTCCTAGAGTCAGTGCGCCCCCTGATGTCTGAGCAGCAGTATAGCAGGATGCAGGGTCTGGCCTCCGACTTCCAAAGCCGCCTAGGGCTCCGGCTGCAGTGGTACCTCAGGCTGAAGTCACTTTGGGCCTCCAACtatgtcAGTGACTGGTGGGAGGAGTACATCTATCTGAGAAGCCGGGGCCCCATCATGGTCAACAGTAACTACTATGGCATGAGTTTTGTCCCTGGTACCATCATCCCTCTGTGTGCTGCCCAGTGTGAGAGGATTTTCAACACCACTCGCATTCCAGGAGAGGAGACTGactCGGTGCAGCACTGGCAAGACAGTGAGCATGTGGCCGTGTACCACAGAGGACGCTATTTCCGTCTCTGGCTGTACCAGGCGGGGCGGCTGCTCTCCCCCCGTGAGATCGAAAGCCAGATACAGCGCATCCTGGATGACTCCTCCGTGCCCCAGCCTGGGGAGGAACAGCTCGGGGCACTGACTGCTGGAGACAGgctgccGTGGGCCAGAGCACGGCGGCAGTATTTCAGCCGTGGGCAGAGCCGCCGGTCTCTGGACGTCATCGAGCGTGCTGCTTTCTTTGTGACGTTGGACGACTCGGAGCAGGGCATGCTGGGAGATGACCCTGCTGCCAGCCTGGACAGCTACGCCAAgtggTTTGACAAGTCATTCTCATTCATTGTCTATAAGAATGGGAAGATTGGCCTAAATGCAGAACACTCCTGGGCAGACGCCCCCATCATCGCTCACCTGtgggagtatGTTTTGGCCACAGACAGTTTCCAGCTAGGCTACAATGAGGAGGGCCACTGCAAGGGTGATATTGACCCAACGCTCCCCCAACCCCAGAGACTGACCTGGGACATCCCTGAAGAGGTGGTGATCGGTCAGTCCCTGGTGGTGGCCCAGGCACTGGCGGACGATGTGGATTTCCACGTGTTTCCGTTCCGGGACTTCGGGAAGGGGAGGATGAAGCGCTGCCGCATCAGCCCTGACGCCTTCATCCAGCTGGCACTGCAGCTGGCACACTATAGGgaCAAGGGGAAGTTCTGTCTGACCTACGAAGCATCGATGACCCGACTGTTCAGAGAGGGCCGGACTGAGACCGTGCGCTCCTGCTCCACAGAGAGCTGCGCCTTCGTCACCGCgctggagagaggagagGAGGCAGAGACTTGCAGACGGCTGTTCCGATTGGCCGCTGAGAAGCACCAGAGTCTGTACCGATTGGCCATGACAGGGGCGGGCATTGACCGGCATCTATTCTGCCTATACGTCCTCTCTGAGCCATGGCGCTTGTCCACCAGCCAGACTCCGGTCCAGCAGGTGGAGCTGTTCGACCTGGTCAACCACCCTGACTATATCTCCTGTGGGGGGGGCTTTGGAccggtGGCGGACGATGGTTATGGAGTGTCCTACATCATCGTAGGGGAGAACATGATCAACTTCCACATCTCCTGCAAAGTGTCCAGCCCAGAGACTgaTGCCCATCGTTTTGGAGCCCACATTAGACAGTCTCTTCTGGACATTCTAGCActcctgacctctgaccccaagGCCCAGCAACCCCAGACTGCACCCAGCACTAAGAAGGATCTATAGGACCACAtcggctggggggggggggtgtctgacctgctttaaaatacaatcctGCATTACAGACCAGCACAGCCCACCACAATGCAATACAGACCAGTATATTCCAGCCCACTAAAGTACAGTCACACTCAGTTGTAACACAGAACAGTCCATTACAGTCAAGTCCAGTAATTATACACAATAATACTGTACAGTCATGGCCAGGAAAAAAACATAGAACAGTACAGTCATGGCCagtaataatacagtacagtacacctTTTGTAAGTGCAGTACAGTCAAATCCAgtacaatgcaatataatacaGCCCAGAAAAGTACCGTAGTACAATCAATTACCATTATAATGCAGTTtagtacagtgtattacagtactgtacagtgtgacacagtgcagtgtgaaaCCGTAGTCTAttgcagtacagtgtaatacagtacagtgctgtgtattacagtacagtgttacaTCAcatcacagtacagtatagtgctGTTCATTAGAGTTCAGTACATTCCAGTTCAGTACAGGGTAATGTGGGGAGCAGGaaagagggatagagagagagatggaaacacaggcaggagaaagagagggagggggagaatgagaggagaaggaggagaatgAGAGGGAGATGTAGGCTCAGTGCTATGCTTCCAGCTGGCAGCTGAGACAGACCAGAGCTGCACCCCCCCCTTTTCCTTCACTCCCCCTCCTCTGTCACTCCCTCTTTTTCCTCACTCCCCCTCCTCTGTCACTccctttttcctctctccccctcttgtCACTCCCTCACTCTTCCTTCTCTCTGACTATACCCTCCTCACTGCTCCCCCTCATCTTCACTCCTGTTCTTTTCtattccttctctccctctctcttctttggtccccctctcttcctccctctttcCTCCTGTTTTCCAATGCAATTCAGAGTGTACGTATTCTATCAATAACTGCAAAATGTGTACTATGTCTTACCTGTGTTTTATAAActtttagtaaaaaaataaatgtctgctttATACAAGGGAAAGTGAATAaatgattcaaaataaaatgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008943 True 3140 mRNA 0.53 16 15301842 15328145

Neighbor

gene id symbol gene type direction distance location
AMCG00008942 NA coding downstream 97186 15202268 ~ 15204656 (-)
AMCG00008937 NA coding downstream 119276 15176616 ~ 15182566 (-)
AMCG00008940 NA coding downstream 149637 15136403 ~ 15152205 (-)
AMCG00008938 NA coding downstream 189547 15109783 ~ 15112295 (-)
AMCG00008939 NA coding downstream 214623 15079065 ~ 15087219 (-)
AMCG00008944 NA coding upstream 44400 15372545 ~ 15391050 (-)
AMCG00008945 NA coding upstream 71434 15399579 ~ 15400121 (-)
AMCG00008950 NA coding upstream 186489 15514634 ~ 15528761 (-)
AMCG00008956 NA coding upstream 214317 15542462 ~ 15596322 (-)
AMCG00008958 tnnt1,LOC107097207,LOC107689677,LOC108427325 coding upstream 321399 15649544 ~ 15660496 (-)
G52666 NA non-coding downstream 17574 15280896 ~ 15284268 (-)
G52621 NA non-coding downstream 62727 15238055 ~ 15239115 (-)
G52594 NA non-coding downstream 129476 15169322 ~ 15172366 (-)
G52513 NA non-coding downstream 278714 14994916 ~ 15023128 (-)
G52518 NA non-coding downstream 295645 14994570 ~ 15006197 (-)
G52676 NA non-coding upstream 87800 15415945 ~ 15477937 (-)
G52683 NA non-coding upstream 98771 15426916 ~ 15428651 (-)
G52692 prmt1,LOC107729532,LOC107658485 non-coding upstream 179103 15507248 ~ 15513223 (-)
G52774 NA non-coding upstream 493041 15821186 ~ 15822218 (-)
G52793 NA non-coding upstream 531378 15859523 ~ 15863705 (-)
AMCG00008934 NA other downstream 244636 15032347 ~ 15057206 (-)
AMCG00008923 NA other downstream 435854 14840707 ~ 14865988 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other downstream 586520 14693830 ~ 14715322 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other downstream 1317949 13938451 ~ 13983893 (-)
G52099 NA other downstream 1615105 13685335 ~ 13686737 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other upstream 141529 15469674 ~ 15505517 (-)
AMCG00008957 NA other upstream 275680 15603825 ~ 15639130 (-)
AMCG00008964 snrnp70,LOC107693498,LOC107729450,LOC106600692,LOC106583923 other upstream 505895 15834040 ~ 15851810 (-)
G52782 NA other upstream 508844 15836989 ~ 15837801 (-)
G52834 NA other upstream 629522 15957667 ~ 15963617 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034040 cpt1aa coding NC_007118.7 CM002891.2 48805534 ~ 48830121 (+)