G53478


Basic Information

Item Value
gene id G53478
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18307437 ~ 18307999 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66903
gtgtagcgttatgttgggtgtattttgataagagcatttgggctctgagctgaagcactgatctaaagaactttggggggggagaggtcttatcagatttccttagctcatcagcttggaactggtttgcatcaaagtgacagttttggggaggatggcaccgagaagaggccaaatagtttggaattctgctatgagatgtctggagaaaggggcctgtaggtgataaaaactctttgaagtggacgagagccagcatttccaaaagatggcatggattgacatcagtcataaatcaagcccccctccaataggacactgggggctgaaaccgaaactCAGGAACCAATCActtattgatctgacagactataaggaacagcggacagtctttctctctctctctctctctcacctgaaccagtaactcgctgccacagctcaacctgtagctctgttgccagaaccggaaccagaaaccaactaagtctttgccggcaacagaagagttaaactgggagaaggag

Function

GO:

id name namespace
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0006376 mRNA splice site selection biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0000245 spliceosomal complex assembly biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66903 True 527 lncRNA 0.47 2 18307437 18307999

Neighbor

gene id symbol gene type direction distance location
AMCG00009011 LOC105011705,LOC106613920 coding downstream 19265 18272618 ~ 18288172 (-)
AMCG00009013 NA coding downstream 54435 18223847 ~ 18253002 (-)
AMCG00009012 NA coding downstream 98900 18175895 ~ 18208537 (-)
AMCG00009015 NA coding downstream 156072 18150863 ~ 18151365 (-)
AMCG00008999 NA coding downstream 642701 17655595 ~ 17664736 (-)
AMCG00009018 eif4a2,LOC107103884,LOC107593804 coding upstream 69435 18377434 ~ 18382391 (-)
AMCG00009019 eif4a2,LOC105889495,LOC107568626 coding upstream 88178 18396177 ~ 18402246 (-)
AMCG00009017 NA coding upstream 96515 18404514 ~ 18410122 (-)
AMCG00009020 NA coding upstream 164635 18472634 ~ 18473701 (-)
AMCG00009021 sox2,LOC106584342,LOC107655276 coding upstream 952288 19260287 ~ 19261111 (-)
G53428 NA non-coding downstream 175652 18131480 ~ 18131785 (-)
G53425 NA non-coding downstream 193799 18102722 ~ 18113638 (-)
G53411 NA non-coding downstream 222955 18084247 ~ 18084482 (-)
G53286 NA non-coding downstream 652229 17654125 ~ 17655208 (-)
G53188 NA non-coding downstream 963655 17343442 ~ 17343782 (-)
G53543 NA non-coding upstream 293714 18601713 ~ 18601951 (-)
G53556 NA non-coding upstream 351352 18659351 ~ 18659633 (-)
G53568 NA non-coding upstream 414111 18722110 ~ 18722374 (-)
G53577 NA non-coding upstream 527137 18835136 ~ 18835373 (-)
G53613 NA non-coding upstream 818743 19126742 ~ 19127019 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other downstream 438741 17868386 ~ 17868696 (-)
AMCG00009001 NA other downstream 560394 17724719 ~ 17747043 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other downstream 1394138 16823795 ~ 16913299 (-)
G53017 NA other downstream 1692976 16613224 ~ 16614461 (-)
G52951 NA other downstream 1902311 16404710 ~ 16405126 (-)
AMCG00009029 NA other upstream 1653028 19961027 ~ 19970276 (-)
AMCG00009027 NA other upstream 1753525 20061524 ~ 20062179 (-)
G53809 NA other upstream 1871800 20179799 ~ 20271814 (-)
G54003 LOC107575789 other upstream 3875089 22183088 ~ 22183565 (-)
AMCG00009060 hltf other upstream 5517230 23825229 ~ 23863035 (-)

Expression


Co-expression Network