AMCG00009150


Basic Information

Item Value
gene id AMCG00009150
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27364305 ~ 27377706 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009150
AAAGCAGTGCGCTGGAATGCCACGCAACAGGATCCTCTTAATTTGGGCAttgatcatatttttttctttaacatccAAGACAACCTGAACTCAGATACACGACAAAAATCCATGTTGAAGCCTGAGGAGATAATCCACTTCAAATGAAACGTGTCAGTGGCGGGGCTTGGAGACATTGCGCCCGGATCTGCCCCGCACTCTTTCTGCCGAGGGTTTAAATGGAAACCGGACGAGAGAATGGGGACTGTGCCGCTGTGAGGGTCTTTCTGCACCGGAGAGCGGGTTATGGAGTTAAGCAGATTGGTGTTATTGCTACTTGTCATGACAGTTGTTGAAGTGCGAGACACACAGAGCAGCAATATTGACTACGTATGCAACCCTCGAGTCAGAGATCAACAGATTCAGAAAGTGAACGATCTCAGGAGTGTGATGATTGTGTGCAGTGCGGCAGCTCTCCtgcccagtccagtccagttgcCATTTGTGGGAGTCCGCAAGGAAACCTGGAAGAAGAAATCCATGCAGGTGAAGAGGGCTGAGATCGTGTCTGAGCTGCGTATGTTCTCAGAGTCCATAGAGAGCATGAGGGAAGGGAACCAGTCTGACTGCCTGTCCATTCTGCTGGACCGGCTGTCTCATAGCATCACCAACCACATCCTCATCATCACCAATCTGCAGCTACCGGGGGAGAAAGTGAATCAGGACAGACCAGACTCTGCCAGGAGCACCCAGAAACTGCAAGATGTGCAGAAGACTTACAGCAACCTCCTGAAAGGCAAGATGGAGAGCTTCTTAAAGGAGCTAGAAGAAGACTTCTGTGAAGGGAGAGCCGATGACTCTTGACCCCAGACAGGACTTTACCTGGGTTTCAGAGTTTTCCTGGAGCTGCTGGTTCTCCGTTCCATCTAATGTGGGCTGGGCCTGAACCCCTGAAGAGGAGACTTTATGACAGCACTTCAATTAAGTTGGGATACTgagctttgcattttgtatataGCACATCCCAGAGCACTGGAAAACAGAATACTAAAAGCTACAGAAACTCATCCAGACACATATCTACTGTGCTCTGTATGTTGATCTCAGTACCCCCACAAGAATGGCCTTGGTTTTATTGAGCTGGCATCCTCCCCAAAAACAAGCACTTTTTAGAAGCACTGCTTCTTTAAACATGATGAACTTCCCTGTAGGCCTGCTACATTCctgtggaaatgctgctctcTCCTGGCCAAGGATTGGAAGACTTCACTGAGCTCAAGGATGAAGGCAGGGCAAAAAGACCTGGAACAGAAGGACTGGCACATAAGTAAAGAAGTACTGCAGTTTTCCATAAGATGCCACTATATAAATATGGATTCTATTTATATCACAAACTATAAGCTAAATGagataaaactaaaaactttaGATGCCATAAAATGACAATCTGGGAACCTAGCTGCTAAGGATCTACCATCCACAGCTCTTGCTCTTAATGTTTTCCACTGGATGTCATTGCAGATTGCTGCCAATCATGCACTGATGGCAAGCTCAAAACTCCCACTCCCACGTTGCAGAGTTAGAGGGCAGTGCCTGGGACACAGCGATTATTTGATTGACATGGTATGAGGGGTGTCGAGCAATGACCTAAGAACATACCAGTTCTGGGCATGTGATACCCAGCATTGATCTGGAAATATACTAATCCTAACCATTGAACCAACTATCCGTGACCAAAGAATGCACTGATTCTGGGCTTAGAAGAACTGCATTGACTTGTATTATCTAtgctatattataatatactgaCTGGTACAGGACAGCTGTCACCCACCTGTGCTGAAGAATACAGCGATGCCCCTGagatattgtaaatgttttatttttttatttaatgtttgaattatttttaactgcCTTCCCCTCGAACATTTATAATATGTGTATAATAAACTCTCAGACTATATGTAttccagtaaaacaaaatgtcaaaatgttcaTATATGCTGCATTAATAATTGATGATCTGTGTTGGGATGTAATGGATTACTGGTATGGTCATAGTAACGCAATTACCATAATCAGATTAGAAACCATCAGTATTCATTTGTTTACTCATGCTAAAATCTGTAACACAGTTATGATAATAATGGGCATCATCTGACAGGTTACTTCTTGAAATTTCTTGACTCTGTACAGATAGGCTAAGATCTCTAGCTGGTGGTTTAAAAAGTCAGGAGGTCACAGATCATTTTATAATGATGTGGCGCTATTCCTGTTGagggaaaatactttttttaactCACAAGTCCAATACAGCAGTTAATTACACATATTCCAGTGTGTGTAGATTAGAGAGAATTTTCTCAATTGTTTATTCTTCTGAAAAATATACTGGAACTTCAACTGGATGCCAACATgacatattttctttccattagaCCGCCTTTGTTCTCGTCAACTTGTTTATGAATGTACGACATGCGTTGTGTTTGTGAATTTGCAATTTGAACTGTGATGTTTTTGAAGtgcttatttttatgtttctatttgtttggtgccttaaaacaaatactaataaaTTGGATGATTAATAGATTTTTCTAACTGTGATCTTATCTGCGATAAAGTCCTTGTTTTTTAACACCTGTGCAAGAACATGACAGTTATGCTTTAAAGGAAAACTGTTGACTGGCATCATTGAGTAGACACAAGTAGCAACTTTTCAAGCACacatataatttgcatttacttCATTTAGGATTCTCATCtgaaaa

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009150 True 2756 mRNA 0.42 5 27364305 27377706

Neighbor

gene id symbol gene type direction distance location
AMCG00009147 NA coding upstream 259414 27102496 ~ 27104891 (+)
AMCG00009144 NA coding upstream 276447 27077814 ~ 27087858 (+)
AMCG00009146 NA coding upstream 305345 27037329 ~ 27058960 (+)
AMCG00009145 NA coding upstream 331348 26994958 ~ 27032957 (+)
AMCG00009140 psmd2,LOC106613117 coding upstream 382454 26969885 ~ 26981851 (+)
AMCG00009154 LOC107729591 coding downstream 7062 27384768 ~ 27389302 (+)
AMCG00009153 NA coding downstream 25582 27403288 ~ 27416448 (+)
AMCG00009152 ecel1,LOC106613064,LOC102301938,LOC107684524 coding downstream 83524 27461230 ~ 27477658 (+)
AMCG00009162 NA coding downstream 115695 27493401 ~ 27494525 (+)
AMCG00009163 rubcn,LOC105896451 coding downstream 282929 27660635 ~ 27671005 (+)
G54951 NA non-coding upstream 41510 27322540 ~ 27322795 (+)
G54950 LOC106613058 non-coding upstream 42115 27321949 ~ 27322190 (+)
G54949 NA non-coding upstream 44334 27319768 ~ 27319971 (+)
G54948 NA non-coding upstream 47148 27313955 ~ 27317157 (+)
G54936 NA non-coding upstream 246382 27110880 ~ 27117923 (+)
G54969 NA non-coding downstream 42823 27420529 ~ 27422675 (+)
G54997 NA non-coding downstream 148361 27526067 ~ 27527494 (+)
G55184 NA non-coding downstream 947653 28325359 ~ 28325659 (+)
G55202 NA non-coding downstream 1001809 28379515 ~ 28380370 (+)
G55203 NA non-coding downstream 1002686 28380392 ~ 28380755 (+)
AMCG00009129 NA other upstream 567537 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 1776690 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 1870732 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 2446442 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 2547771 24812618 ~ 24816534 (+)
AMCG00009164 NA other downstream 235877 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 1388748 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 1551186 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 1725902 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 1793617 29171323 ~ 29174731 (+)

Expression


Co-expression Network