G54948


Basic Information

Item Value
gene id G54948
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27313955 ~ 27317157 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU68661
gagagagcggcTGGACAGTGAGTTAGCATCCTTAATGAAGCCCACCTTGTTGAGAGCCTACAAGCAGTATAGACAGAGCAAAGGTAAACATCTCTAAATGTGGGTCACCAGGGTTAAGTTCAAGTtgacaggtgtgtgtgagtgtaaatTATAGAGTGTGATGGGAGGGTGAGGCAGATTGTGCTGGATGGACGGGGAATGGGATAGAGTGAGGGAAGaggagtgagagtgtgtgcagTAGTGAGACAGGTAGGCCGATGGGGTGCAGGTTCGTGTCACAAATGCCTTCTCCCCAGGCAGACCAGAGCAGGCAGCTTTTGGAAACGTTTTGACTTCATttgcaagttttattttatttttctcctcacattcaataaatacaaaaaaagaaaactaattattattcataataataataataataataataataataataataattataaaaataataacaataacaataatacaaataaaaaaaatacaataataagacagaaaatgttgctgaaaaaatacagaaatgaaagGAACCTGGCACACACTAGTTTGTAGGGACCCTGCAATGCCATGCTCTGACCCTGTGCAAACAGAGTCCAGCGTACCTTAGAGAGAGAGTAGGATTGACTGGATCCGGAGGGCAGCTCATGacaatttccatttaaaacccTTACAATTACCCAGCTACATGTCTAACCCGCTTTAAATGAAACCCACTCATGACACATGATTCAGAGGGATGAATACTTTGATCGAGGCACAGAGTGACCTACGCGCAGTGGCCTTTAACTGGACAGATGTGCACCAAAAGTCAAAGCAAACCTGGTGATCTAGTGTCCATGTTTGCCCCTGTAGTTGAGCTGCTCTACAAAGACCCTGCATTGTCTCCAAACCAGATACACCCCCCACTCACACTATACAGGTGGTCTACCAGTCCCCATGGCAACAGGATCCCTGGCTGTTTACAGCACAGCATGGGCATCCTTTTACTGCAACACAAAGACCACCACCAGTTCTGCGGACCCCACTGGGGAAATGGGGAAGAAAGAGGAGGGGCATCAAAAAGGACCCACTGTCACTCTTTTCTCTGCAGCAGGCCAGTAACACAATGCATATGAaaggcagcacacacacacacacacacacacacatatttacaaatCCATCCTGTGTGTGTACAAATCTGTCAAATCCATTaccccccccacatacacacccGCCTCCAGCCCTGCTCTCTTTTACTCTCACTCCTCTGCCCTCCTGGATGTCCAGTCATTTCCTCTTCCCTTTGCAGGGGATCCCTGGGGTGGGATGGCTAAAGCAAAGCCCCCCTGTACACTGTGCTGGGAGACTGATCAGCCTGGCTCTGCAGAGCAGGTGTCTGAAGATGGTTTGAAGGTTATATGGCGTGTGGTTTACAACATACAAGAAGCTGTCCTTCCCATAATGGGTCCCAGTCTGCTTTCATGCACAGAAATATCCTGACGTCTGTGCGAGAAATAgcctttacttttttgttttactaaaaaGTTCCCATGAATAAAAAATAGTACAAAGACGGACATCCAAACCGTATGGAAAATAGTTTTTGGTTTACCCTGTACCTCTTGTTTTAAAAGAGAGAGTAGAGGAAGCTAAACCTAAATGGCTCACAGAGTTGCGTTTAAAGACTGTCAGTTCAGCTGCTTTGTACATTAGCACCACAATAACACTGACAATCATTAAGGCTCATTTGCACTTCAACAGATCCCCTTTATTATACCATTTTAAGATCCTTTAAAGAACTCTGTGGCTTTAATAAAAGTCTATGTAAAACAGAATGGGAATCTTTGTGGTTTAACACAAAGATTATAGCTAAGTGGGGGTTTAGGTACAATTCACTTAACGTTAACTCAAGTGTTCATTCATTTGATTACTGAGAAACTGAGGGCAAACCTGAACACCTTTTCTGCCATGATAGGGGAAGAATCCAGGCATTGTTAGGATAGACAATAAATCCCCCATCATCCCCTCAGTTCGGTCTCTTTATGCAATTTCCATTCTCAGAAAAATGTTAAAGGAAATACCTTGAATCACAATGGACCAGATTTTCCTTGTCTGAGGTCATGGAGAAAAATTATGTGATTGCTTGACCAAAACATTCCCATATCAGATTTGGGTGGTCTTTCCTCTGTATGTGTACTCTGCTTTGCCCCCAAAACTGGCCCTGCCCCCAGTACCCAAACAGAGGCACCCAGTGAATCACAGCCGTCCGCAGAAAAGAGGTCTTTCCCAGCTGTAGAGCAAGAAAACAGCCGGGCAGAACTTCCTTTGAAGGGTCCCAGCATCAAAACCTGTCTGTAGGGGATGGTTTAAGCAATAGGCACACTAAGCATGCTTGGCTCATTCAAAACCACATTATAAGAGGGGAACTGTGCTGATCCCACGCTTCCCAAGTGGAGCCAAATGAGCCAGGCTAAGTTATCCGAGCTGAATATTTGCAGTGGGCTGGCAGGGAGTCTTTCACAGCAGTGGGACAGGTTTTCAATCCACTCCTCTGTCATTGCTGGAAACAATTCCCAGAGCATTGATTTTCGGGACTTGAATTGTAAAGAATGTACATTTCCTGGGATGTCTTTCAGCCAGGCGTTCAAAGGAAGACATGTTGATACTGGACATCAAGGTGACAGCAGGCAGGAGTTGGATGTTTTAAGAAGTGATGGGTGGTAGAAACCgttgatgaaaatgttttttggtcatTAAATTAGAAGATGCAGATAGGAAGGcagttgtctgtctgtgtgcaggtggTAGGTGACACCCGCAGTCTTCAGAgtcaaagttaaataaaataacataaaaaggcaaggaaattaaaaaagaattaAAGCAATAGGTATTGTCCTCCTTCTTATGTGCAGTATGCAGAGTATAAATTCCCTCCCGTGTCCAAAGCACATATTTCATTGGTGTCTTACAAGTTCCCTCTTTGCCGTTCTGGTgctttctccccccccccctctctctctctctctctctctatctttcaCTCTGCTTTGTTTCATTACAAATCCAAAGTGTGAGTGTGGGGAGCAGGCCAGCGTGCAGTCTGTGGCCAATCCTGGGTGAAAGACAGCAGGGGACCTCAGGGTGGTTAATATCTCCAGTTGCGCTTCTTCTCGGGCGATTTCAGTGGCTCCTCATCTTCCTTTGAGTTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68661 True 3203 lncRNA 0.44 1 27313955 27317157

Neighbor

gene id symbol gene type direction distance location
AMCG00009147 NA coding upstream 209064 27102496 ~ 27104891 (+)
AMCG00009144 NA coding upstream 226097 27077814 ~ 27087858 (+)
AMCG00009146 NA coding upstream 254995 27037329 ~ 27058960 (+)
AMCG00009145 NA coding upstream 280998 26994958 ~ 27032957 (+)
AMCG00009140 psmd2,LOC106613117 coding upstream 332104 26969885 ~ 26981851 (+)
AMCG00009150 NA coding downstream 47148 27364305 ~ 27377706 (+)
AMCG00009154 LOC107729591 coding downstream 67611 27384768 ~ 27389302 (+)
AMCG00009153 NA coding downstream 86131 27403288 ~ 27416448 (+)
AMCG00009152 ecel1,LOC106613064,LOC102301938,LOC107684524 coding downstream 144073 27461230 ~ 27477658 (+)
AMCG00009162 NA coding downstream 176244 27493401 ~ 27494525 (+)
G54936 NA non-coding upstream 196032 27110880 ~ 27117923 (+)
G54928 NA non-coding upstream 217182 27096537 ~ 27096773 (+)
G54880 NA non-coding upstream 329798 26982843 ~ 26984157 (+)
G54833 NA non-coding upstream 462952 26849222 ~ 26851003 (+)
G54812 NA non-coding upstream 489026 26822296 ~ 26824929 (+)
G54949 NA non-coding downstream 2611 27319768 ~ 27319971 (+)
G54950 LOC106613058 non-coding downstream 4792 27321949 ~ 27322190 (+)
G54951 NA non-coding downstream 5383 27322540 ~ 27322795 (+)
G54969 NA non-coding downstream 103372 27420529 ~ 27422675 (+)
G54997 NA non-coding downstream 208910 27526067 ~ 27527494 (+)
AMCG00009129 NA other upstream 517187 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 1726340 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 1820382 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 2396092 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 2497421 24812618 ~ 24816534 (+)
AMCG00009164 NA other downstream 296426 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 1449297 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 1611735 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 1786451 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 1854166 29171323 ~ 29174731 (+)

Expression


Co-expression Network