G54880


Basic Information

Item Value
gene id G54880
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26982843 ~ 26984157 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU68587
ataatagtaacaaccttgctttaaaacaataactatcacatttaaaatgcaaaaacataattttgatatttttacctGTGATTTTTATGAGTAGGAAGTGTTTTGTTAATCTGTATGGTTCATAGAATGGTCTGTGGAAATCCCAAAGATTCAAGTGGTCTATTAACCAACATGTTTAAGAGCCATTGTTATAAGGGTTTCATTAAGAGTCAGAGGTGACTGTGCTTTTGACAGACAATATTTCTATATGCATGGTAGtgcatacaaaacatttcaatgagATCTGGACTACCCTTCAGCATAAGAGCTGACACCCTCGAGGTCTGTTCTTGTGTCATCAAAGTGTTCCTGTccaaatagaaataataatgcagaaataaaaccaAGAACATAAATGATGGTCAAAGGGGTGTCAAGCTAAAAACTAAGCAGAGACTGTCCATACTTCACGCATAACACAATTTGGCtttaaataataactttattaatataaaaaatagggATTGTGCTTGTTAGCGTGTATCACAATACGGAGAAGCATTATGCTTTGGCTACTTATTGTAGAGGGGTATACAATTATGTACAATGCAACTCGgcaaaatattcaaaacattgtaCGGACAATGTATGGCACAGTGCACTGGAAAAGTGAGCATTTAGAACAAAGGAGGGTCTTCTGGTAGGATTTTAGGATGGTGTGTAGTGTTAATGCAGTGATTATAGCTTATGGGTTGCTaggcagagagtgagagactACAGGTGTAGCAGGATTTGTGCAGAGATTGGTACCCACTGTAAAGTCTGACAACAGAAGCAAAGTAGAGAAAATGCTATGTGAACACTAAATATCCCAAACACTGTTAAATGTTAATAGAACTGGATAGATATTGAGCACAGAAAGCGGAATTAAGAAATACAAAGAGGAAAATGCACTGAGCAAGTTAGAATGAACATGTACATGATTCTTTTATAAGGTTCCCCAgatgaaaaacatgaacaaaacattttctttagctttaaatcaataacacagTTTAGATCTTAAGTCTTTGTGTATACAGCATACTTGTGTAAAATATATCTAAAGTTATATGATGTgtatacacaaaatattgtatgtaaattactttaaagGTGTCTGCTTAACCTCTACaacaacactactactacttctgaaaaataatactaGAGATTCCATTCCTTTGACCTGTCTGTGTAGGACAATTATGTAAGACCAGGAAACAAACTTCCTTAGCACTGATTCCCCAGCAGCCATTTGTATAACTTTGTGTCAACTGTATAAAATATTCTAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68587 True 1315 lncRNA 0.34 1 26982843 26984157

Neighbor

gene id symbol gene type direction distance location
AMCG00009140 psmd2,LOC106613117 coding upstream 992 26969885 ~ 26981851 (+)
AMCG00009139 NA coding upstream 79571 26898609 ~ 26903272 (+)
AMCG00009130 neu4,LOC106581489,LOC102793282 coding upstream 146426 26830199 ~ 26836417 (+)
AMCG00009138 NA coding upstream 180994 26801474 ~ 26801849 (+)
AMCG00009128 srprb coding upstream 197053 26782537 ~ 26785790 (+)
AMCG00009145 NA coding downstream 10801 26994958 ~ 27032957 (+)
AMCG00009146 NA coding downstream 53172 27037329 ~ 27058960 (+)
AMCG00009144 NA coding downstream 93657 27077814 ~ 27087858 (+)
AMCG00009147 NA coding downstream 118339 27102496 ~ 27104891 (+)
AMCG00009150 NA coding downstream 380148 27364305 ~ 27377706 (+)
G54833 NA non-coding upstream 131840 26849222 ~ 26851003 (+)
G54812 NA non-coding upstream 157914 26822296 ~ 26824929 (+)
G54806 NA non-coding upstream 168351 26787824 ~ 26814492 (+)
G54777 NA non-coding upstream 322497 26650482 ~ 26660346 (+)
G54724 NA non-coding upstream 442643 26538319 ~ 26540200 (+)
G54928 NA non-coding downstream 112380 27096537 ~ 27096773 (+)
G54936 NA non-coding downstream 126723 27110880 ~ 27117923 (+)
G54948 NA non-coding downstream 329798 27313955 ~ 27317157 (+)
G54949 NA non-coding downstream 335611 27319768 ~ 27319971 (+)
G54950 LOC106613058 non-coding downstream 337792 27321949 ~ 27322190 (+)
AMCG00009129 NA other upstream 186075 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 1395228 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 1489270 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 2064980 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 2166309 24812618 ~ 24816534 (+)
AMCG00009164 NA other downstream 629426 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 1782297 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 1944735 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 2119451 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 2187166 29171323 ~ 29174731 (+)

Expression


Co-expression Network