G54833


Basic Information

Item Value
gene id G54833
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26849222 ~ 26851003 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU68536
ttgtcaggtaaaatattacaattgtaaGCCAAgttgtataaaaaaaactgttttacagATATGAACACCGACACGTGTTTGGTCCCTAAATGCACGCGCACACGCAGACACACTTGCACCctcgcacactgacacacacaagcacacacacacggacagagAGGTCTATTCAAATCCCTATTGTCTTGCTATTTACAGAGAAAGCAGTTACTACGAGCAGCCTGCATTAATCATCAGAGGGTATTTTCATACGCATTGCTTTCTTTCAAAAGCAAGTATAGTTTGCCATTTCTGCTGTGCACTTAACCCATAAATGCAATACTTTTATGAAAGGATCAGTTTGCTTATTGCAGCTAGTCGGGGCGGGGAGGGATAAAGTTTCCCTTAAACAAATTACAGGGCATAAACATTCATGTTAATGTATGATTATAAAAGTATAACAACAATCCTGATATGTACAATCGATCTCCTTAGTGCATCTATTCaaccaaaactaaataaaacaaaatgggaaataaatcaaGATAATTTAGTAGATGCACATGTCTGACATAGTGCTTCAGAATAATTGCTTAAAGAGAATTCTCTTATTTAAACACAAGAAACATGACTAATATTCTATGTTCCTGCTGGGGATTAAGAACATTACTGCATGGAAATAACATTATCGTCTTGCACTATTGTATTGGCCCACAAGCATGATGAAAAAACGGACTTCATGGTGAGCCTGCACGCACCACACCAACGCTTGTCCTTGTACCTTGTCATAGACAATTCCAGAAGGTAATCCCACACACTAGGACTGCTGATCTCACAGTGGGACAGCACACTGCATCCTTGCATTAAGCAACGGGGTGGCAAAACAAAGTACTGCCCTTACTGATATAGTGCCAGTCACAAAACATAAGGTATTTTAAAgccaggaaaaaacaaaatgacccGATCATAAGAGGGTATGTTTATACTATCTGTGGCAGCCTTATCATCTGTGTATATAGTGTTGGTTGGCTGTGCAACCAGTACAGTCCTAGAGCTACCATGTGCTGTCATCTTATGTACAGCTTGCATGAGAAGAATACTGCGGTTTTGGGAGTGTGAATGGTGATCACGGCAATACATTACTGCTTGAAATTGATAACCTTCTAGCATCTGTGTTCAGTAATTAAAACCTTACAGAAaaaacagaggaagaaaaataatctctttTCAGGATGCACTGCTGTGTTTAAACATTCTTATCCAATTCATTGTCATTGAATCGCCTATAACTGGAGGAGAATCAAAAACTCATACAAATggaagtttaataaaaaaaacactaaaataccACACTGAATAATTGTTAGAAGAGGAGCACTTTGAATTGGGAGTCCCAGTGGAAATGCAGATCCCAGGGACAGGAATAAGAATGAAGCAGATTGGCTCCTTAAAGAGCTACAGTAATATTCCCCATGGAATAAATGTCCCTAACGAGCTAAACAAAGTACTGACTCACGTGAGGGTGACATGTTTACAACAATGGGAAACCAAGACCTTATAAGGAAGCTGATGCTGAAGGGGAAGTTAAAACGATCGGGTGACCAAGTCAACGCAAGCAGCTCGACACTCTTCCAAAATCACAGCCCAGGACCACAGGGCCAGTGAGACTACACCCCGAGATTCACACATGACCAGGACCACACTGACGGGGCTTTGGTTACTTACCAcatgtgattattattcatattttcaatacAATGCACTTACCAAAATTAACGATCAAAAGGCTAAGGTGGTATCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68536 True 1782 lncRNA 0.40 1 26849222 26851003

Neighbor

gene id symbol gene type direction distance location
AMCG00009130 neu4,LOC106581489,LOC102793282 coding upstream 12805 26830199 ~ 26836417 (+)
AMCG00009138 NA coding upstream 47373 26801474 ~ 26801849 (+)
AMCG00009128 srprb coding upstream 63432 26782537 ~ 26785790 (+)
AMCG00009122 fam168b,LOC107560647,LOC107590359 coding upstream 205751 26636487 ~ 26643471 (+)
AMCG00009123 pak2 coding upstream 273780 26565688 ~ 26575442 (+)
AMCG00009139 NA coding downstream 47606 26898609 ~ 26903272 (+)
AMCG00009140 psmd2,LOC106613117 coding downstream 118882 26969885 ~ 26981851 (+)
AMCG00009145 NA coding downstream 143955 26994958 ~ 27032957 (+)
AMCG00009146 NA coding downstream 186326 27037329 ~ 27058960 (+)
AMCG00009144 NA coding downstream 226811 27077814 ~ 27087858 (+)
G54812 NA non-coding upstream 24293 26822296 ~ 26824929 (+)
G54806 NA non-coding upstream 34730 26787824 ~ 26814492 (+)
G54777 NA non-coding upstream 188876 26650482 ~ 26660346 (+)
G54724 NA non-coding upstream 309022 26538319 ~ 26540200 (+)
G54711 NA non-coding upstream 358061 26489149 ~ 26491161 (+)
G54880 NA non-coding downstream 131840 26982843 ~ 26984157 (+)
G54928 NA non-coding downstream 245534 27096537 ~ 27096773 (+)
G54936 NA non-coding downstream 259877 27110880 ~ 27117923 (+)
G54948 NA non-coding downstream 462952 27313955 ~ 27317157 (+)
G54949 NA non-coding downstream 468765 27319768 ~ 27319971 (+)
AMCG00009129 NA other upstream 52454 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 1261607 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 1355649 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 1931359 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 2032688 24812618 ~ 24816534 (+)
AMCG00009164 NA other downstream 762580 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 1915451 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 2077889 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 2252605 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 2320320 29171323 ~ 29174731 (+)

Expression


Co-expression Network