G54711


Basic Information

Item Value
gene id G54711
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26489149 ~ 26491161 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU68381
CCTTGTAGTGTTACCAAAACATactcctaacaaaaacaaaaaggacaacctccaaaaatattttcctttctttattgaCAAGAGTGTAgatttgtacaacattttaaaataacgaaATACCAGACTCCTGAAGTCCCTGCTTTAGCACACCTGTAACAAatctaaactaaaaataaattaataataacacatttaacacaatATAACCTTCTTCCACATAGCACAACCTGGGAAGTTAACAGGAAAAGGTGTTTTATAGATCATAATAAAGAAATTGGCTGGAGGACATCAtgcaaatcattataataaaggGAAAAGCCTAAGAGCGAATTAGTCATTGGTTATTCCATCTGCaactcatatttattttaatatttatttccccatCCGATTTGTCGAgagctgtgtttttgtatacTTTGTGGCAGGAGCTCAATGAGTTTCATTAATCAGTGATTTGAAACCAAACTAAATTACAGAACAtcaattattttgctttgctCTGCAAGGAAGGATACATGTGCATTACTAATTATTCTGATACACGGCTGCCTAATCTCTTAACAGCAAGTTTCACCGAGGCATACGAACACTGCAATAGGACAaagctgggggagggggggagaacaaaaaaaaaaaaaaaaagttttgTTTCCAGTATCTGGAAAACAgtgttaattaagttaattaaaccCTACCATGAATGAAAAAAGCAAGACCAATATGTAACCCTTTATCAGTTCATATTAAGTGCAGGTTACAAAAGCCACACAACTGGGCACACTCTGAAGACCATCTATAGGATGAGTAGTCaccattgtatttatatatatatatatatatatatatatatatatatatatatataaattaaataaaaggccATGCTTTGTAGAAGTGCTGGATTTAAATACTTGAAAGGTTTaggaatagaaaaaatatatatactgctaCAACTTTCAACATAGGACACTGGTCATTGCAGAAGACATCCAGTGAACTACTTCATTATTTCTCCAAAACTATACCCTTAACATCTTACCAATTCAAAATTTTATGTAGCAAACCgccatatttttattaaagagTACAAACACTGAATTAACTTGAAACACTTACCGACaagaaccaaaataaaatgtaaaaaatatacgCTGGccttctgtaaataaataagtggagTGTACAGTGCATGCACAACGCAGAAATGCAACTTTCTTGTTTGAAGCAAGGAGTTCCTacacaagacaaataaaattaaataaacacacaacaaactgaaatccacaaacagaaacaaaaatcaattgaactacaaagaaaaaactaatcaCATAATGGTAATTTTGTTAATATCAGACAAGTGTGATTAACTTGGTAATAtgttccctttctttttcatctTCAGTACATTCACAGAATCTCTAGCTAAAGCAGTGAATCACATACTACTAGAAAGTgctagtgtttttaaaataaaggcttTGGTAAGTGTGCAGTCACTGACAAAAGGAGATCACTTGTACATCACAAATACAATGCCTCTGTGGTTTACAGCCGGGGGGAGCTGACAGTGAAGCTAAAACACCCAGAAGAGAGACCCCAGGGCCATGCCAGTCGCTGCCCCTGCGAGCATGCCCAGTGCCACATCTCCGTTGTCATCGCGGTAACGCTCACGGACCACGACCTGATTCACTCCAGGGGCGGGGTAAGGGCCTGGAAAACATTCACATCAAACTGCCTTGGAGattccatttcagttttttccccccatttatGAATACAGTGGTATCAGTTAGAAGTGTGCTGAGATGAATTCTGCATTCACTTTTTCCATTCAAATCTCTGCTTAGTTACGATAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68381 True 1864 lncRNA 0.36 2 26489149 26491161

Neighbor

gene id symbol gene type direction distance location
AMCG00009110 LOC103372263,LOC106600124,LOC108428906,LOC108239506,LOC102295545,LOC101472694,LOC103395911 coding upstream 773101 25693486 ~ 25716048 (+)
AMCG00009109 epha4b,LOC105890571,LOC108428906 coding upstream 815137 25667520 ~ 25674012 (+)
AMCG00009111 LOC108428906,LOC107694655,LOC106600124,LOC107384117 coding upstream 849294 25623797 ~ 25639855 (+)
AMCG00009107 NA coding upstream 914585 25571328 ~ 25574564 (+)
AMCG00009096 NA coding upstream 1331598 25151798 ~ 25157551 (+)
AMCG00009117 acvr1l,LOC107678695,LOC107602619,LOC108428902,LOC107749086 coding downstream 6691 26497852 ~ 26509639 (+)
AMCG00009115 NA coding downstream 30703 26521864 ~ 26528491 (+)
AMCG00009116 NA coding downstream 41287 26532448 ~ 26538242 (+)
AMCG00009123 pak2 coding downstream 74527 26565688 ~ 26575442 (+)
AMCG00009122 fam168b,LOC107560647,LOC107590359 coding downstream 145326 26636487 ~ 26643471 (+)
G54705 NA non-coding upstream 81335 26407537 ~ 26407814 (+)
G54609 NA non-coding upstream 967835 25521019 ~ 25521314 (+)
G54608 NA non-coding upstream 971240 25516373 ~ 25517909 (+)
G54580 NA non-coding upstream 1075327 25404670 ~ 25413822 (+)
G54566 NA non-coding upstream 1140166 25347278 ~ 25348983 (+)
G54724 NA non-coding downstream 47158 26538319 ~ 26540200 (+)
G54777 NA non-coding downstream 159321 26650482 ~ 26660346 (+)
G54806 NA non-coding downstream 296663 26787824 ~ 26814492 (+)
G54812 NA non-coding downstream 331135 26822296 ~ 26824929 (+)
G54833 NA non-coding downstream 358061 26849222 ~ 26851003 (+)
AMCG00009108 NA other upstream 901534 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 995576 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 1571286 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 1672615 24812618 ~ 24816534 (+)
G54263 NA other upstream 2513243 23883317 ~ 23975906 (+)
AMCG00009129 NA other downstream 302376 26793537 ~ 26796768 (+)
AMCG00009164 NA other downstream 1122422 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 2275293 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 2437731 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 2612447 29103608 ~ 29108227 (+)

Expression


Co-expression Network