AMCG00009109 (epha4b,LOC105890571,LOC108428906)


Basic Information

Item Value
gene id AMCG00009109
gene name epha4b,LOC105890571,LOC108428906
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25667520 ~ 25674012 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009109
TGCAGACCTGGTTTCTACAAGGCTTCAGCCAATGATGCATACTGTATGAAATGCCCCCCGAACAGctactcccatcaggagagggCTTTAGAGTGCACCTGTGAAAGGGGGTACTATAGGGCGGAGATGGACCCACGATCTATGGCCTGCACAATGCCCCCGTCTGCCCCCGAAAATCCCATCTCGACGATCAACGAGACATCAGTCACCCTGGAGTGGAGCCCACCACGGGAGAGTGGGGGCAGAGGAGACATTACCTACAGCATCCACTGCAGGAAGTGCTCGGCTGACAGCAGGAAGTGCAGCCCCTGTGGAAGCGGCCTACACTTTGTCCCTCGGCAGTTCGGCCTCTCGTACGCTAAGGTCCTTGTCACTGACCTGCTGCCCCACACCAACTACACCTTCGACATTGAGGCCGTGAATGGGGTGTCGGACCTGAGCCCCAGCCCCAAACAGTACATCTCCGTCAACATCACCACCAGCCAAACAGGTTGGCAGCCATTTACATTCACCGTGAGTGTGATCCTCAAGGAGAGGAAGAGCAAAGATAGTATTACCCTGGCCTGGCAGGGCCCAGAGAGAGCCAACGGAGCCATCGTGGAATACGAAGTGATCTACTATGAGAAGAATCAGAGAGATCAGAACTACACAGTGTTAAAGACCAAGTCAAACAGCATGACAGTAGATGGGCTGAAGCCGGGCACTACGTATGTGTTCAGGGTGAGAGCGAGGACAGATGGGGGCTATGGGAACTATGGAGGCGAGATTGAACTGGAGACCAGCCATGAAGGTGAGATATTGACCTGA

Function

symbol description
epha4b Predicted to enable transmembrane-ephrin receptor activity. Acts upstream of or within negative regulation of axon extension; negative regulation of collateral sprouting of intact axon in response to injury; and regulation of myelination. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in several structures, including axis; immature eye; intestinal bulb primordium; nervous system; and pharyngeal arch.

NR:

description
PREDICTED: ephrin type-A receptor 3-like, partial

GO:

id name namespace
GO:0030517 negative regulation of axon extension biological_process
GO:0006468 protein phosphorylation biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0048685 negative regulation of collateral sprouting of intact axon in response to injury biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009109 True 807 mRNA 0.55 4 25667520 25674012

Neighbor

gene id symbol gene type direction distance location
AMCG00009111 LOC108428906,LOC107694655,LOC106600124,LOC107384117 coding upstream 27665 25623797 ~ 25639855 (+)
AMCG00009107 NA coding upstream 92956 25571328 ~ 25574564 (+)
AMCG00009096 NA coding upstream 509969 25151798 ~ 25157551 (+)
AMCG00009097 NA coding upstream 629842 25032102 ~ 25037678 (+)
AMCG00009089 NA coding upstream 708884 24950775 ~ 24958636 (+)
AMCG00009110 LOC103372263,LOC106600124,LOC108428906,LOC108239506,LOC102295545,LOC101472694,LOC103395911 coding downstream 19474 25693486 ~ 25716048 (+)
AMCG00009117 acvr1l,LOC107678695,LOC107602619,LOC108428902,LOC107749086 coding downstream 823840 26497852 ~ 26509639 (+)
AMCG00009115 NA coding downstream 847852 26521864 ~ 26528491 (+)
AMCG00009116 NA coding downstream 858436 26532448 ~ 26538242 (+)
AMCG00009123 pak2 coding downstream 891676 26565688 ~ 26575442 (+)
G54609 NA non-coding upstream 146206 25521019 ~ 25521314 (+)
G54608 NA non-coding upstream 149611 25516373 ~ 25517909 (+)
G54580 NA non-coding upstream 253698 25404670 ~ 25413822 (+)
G54566 NA non-coding upstream 318537 25347278 ~ 25348983 (+)
G54563 NA non-coding upstream 359025 25308260 ~ 25308495 (+)
G54705 NA non-coding downstream 733525 26407537 ~ 26407814 (+)
G54711 NA non-coding downstream 815137 26489149 ~ 26491161 (+)
G54724 NA non-coding downstream 864307 26538319 ~ 26540200 (+)
G54777 NA non-coding downstream 976470 26650482 ~ 26660346 (+)
G54806 NA non-coding downstream 1113812 26787824 ~ 26814492 (+)
AMCG00009108 NA other upstream 79905 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 173947 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 749657 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 850986 24812618 ~ 24816534 (+)
G54263 NA other upstream 1691614 23883317 ~ 23975906 (+)
AMCG00009129 NA other downstream 1119525 26793537 ~ 26796768 (+)
AMCG00009164 NA other downstream 1939571 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 3092442 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 3254880 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 3429596 29103608 ~ 29108227 (+)

Expression


Co-expression Network