AMCG00009096


Basic Information

Item Value
gene id AMCG00009096
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25151798 ~ 25157551 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009096
TGAGACTTCCACACTGACACTGGACACTGAGAGCTGGGGAATcatttgctttctctctctctctctgttcattGCACTTGATGTCCGCCACTTGTTGAAGgaagcaaatacattaaataagTTGGCTGAGGATTGATTCCAGTCACCATGAAGCTGGCTTGGGCACTGCTGTCCTGCCTCTTGGTGGGAGTCATCAATCTGTGCCTCTcacaagaagaagaaactgCTCTAGAAGAACCAAGTGGACCAGATTCAGAGACACATAACGAGGTGGCAGATGACAGGAAGCCCTGTGCTGGTTGGATGGGAGGAGTACCAGGTACACCTGGACACAACGGTCAACCAGGCAGGGATGGACGAGATGGCAGAGAtggagaaaagggagagagaggagagccaGgtGAACCTGGAGAGAAGGGAGATCCAGGGGAGCACGGGGCTGAGGGTCCAGAGGGGCCCCGTGGCTTCCCAGGCACCCCAGGATTAAAGGGTGAGCGGGGGGAGAGTGCTTTCCTGTACCGCTCGGCCTTCAGTATCGGGTTGACCGACCGCACACCCATGCCCAATGTACCCATCAAGTTCAACAAGGTCTTCTACAATGACCAGCGGCACTATGATGACAGCACGGGCAAGTTCCGCTGCACCATACCTGGCATCTACTTCTTCACCTACCACCTCACCGTGTACATGAAGGACGTCAAGGTTAGCCTCTACAAGAATGACAAATCCATCATGTTTACTTTCGACCAGTTCCAGGAGAACAATGTGGACCAGGCCTCAGGCTCCATCATCCAGCACCTGGATTCAGGGGATGAAGTCTGGCTTCAGGTCTATGGCGAGGAAGACTACAGCGGGATCTATGCCGACAACATCAATGACTCCACCTTCTCTGGCTTCCTCCTGTACCCTGACATCAAACCAGTGAACGGTGACCGCTAGACATTCAGCAAAGACTGGggcattaattaataattaattaaatcctgCCTTTCATGTCAAATGTTAAGGGGACTTAACCTTATATAAAATAGCTTTGGACGATAGCTGATAATGAGAGTCATAAAGATAGGGGATGTTTTAGAATTGTTTGTCCCTACCCTGGGTCTTTGAAGAACctgtttagtttgtgtttgcttgtttttgtttggtttggcattctatttttagtttattcttTTATACtgcattcataaaatatataataattctggtgattattaaattatatttattttggtatcatCTGGGTCCTAATGggtttaaatatagaaaaaaaatgtgtaatggacaagtaaacaaactgcatatttaattatctcAACAATTAACTTAATTGACATGAACATATTCTATCATAGCAGTAACCCTTGGCAATGAGAGGTTTAAACTGATCATCTTGTGGGTAGGGAGAGGTTTATTGGTAATTCAGTGAAAGACATTTCGTATTATGCTTAAACAGTCAATGTAACCCAGTGAGCCGAGTACCGTGGTACTTTTTGCAGTAGGCTCATATGAAATAGAAtgtcaaatgaaaatatatttaccatCATGATCCGATAACATTTGGAAACCTCATACAATCCAGGTTTCTTGAGGTGTCTGTAAATCAGGAATAAAGTGATAATGGAGTGATAAACTGCTGGATATGTGAATGGTTTATAATAACATGAATTCCTGTGTTTATTTACCATCAAAAGCAGGCAATTGGCCTTTGTACAAATTATGTATatgtcaattatatatatttctgtaccaCACATCATTATATTCACATATATCCACAACCTTGTTTAATTCTGCTACCTCATTTGCCAAGTGTGGCTACTAGATGATCACAGGCCTGGGCATTACAAGAAATTAAACTGGTTTCAGAGATTAAAAGCTGATATCAAATAATATTAGACTAAAAACATGAAGTGCAATATACCTGTTGATATTATGGATCCAGGGTGGCAAGTATGCAAATAATGTGACTTAATGACCTGTATCCAAGTGTGCGGTGAATATGAAACATTGGAACAAGGCCCTATTATGAAGCACTAAATGTATGCCTCACAGTACGTAATAGTCACTTGTTGGCCTATGAGGAAAGACAAATGACAGGTCCACATTATGTGCTAATGATTGACCACTGCttgacaaaataacattttgttaaatattctGGATCAAATAAGGAGTACTTGTGTCTGTTCTGTAGCAGCTACAAAATAGACCTAAAATAACACTGCATGTGTCACTGGCAATAAATAACCTTGTTATTGCGTGTGTCCATTCTAATCTCTCTCCGCCTGTCTGGTGCAGACACATTACTCTAAAGGTCAGTTGACCACAGTCCAGTTCACCGGTTGTTGAAATTCAagatgtgtttcttttcttttctttttgtaagtttattttaatttaaaataccaaGGTCAGAAAGAACCAAAACTAAACACTCTTGCCAACTCACATGCATTTGAATATAGCAGTCATtgatagaaaaaacaacaacagtgagctctttgtgtatttttcatatatgctatttttaatattaccATTAggattatcatttttttaaaccatttgtaTTTAAGCTGGAATGCTACccaattatattaaacaattattaaatcagtcattttaataaaacaatgtatcagttttTGATAAGAGAGTACAtgcaagaggaggccattcattTTATCTTGCATGATTGATTGGTAGTTGATACTTGGTTCCAGATTTTTATTTATCCAGATCCCCACTACTCTTTGACTTTTAGTCCTTAACTTCCTTATTCTAAAATTCCACTGTTGACAAATCATCCTGGTTTCACTGATAAGAGTTGAGCTGACTTCCTTATAGCCTGTCAGCATATGTCATACCgttgagtcagtcagtcaggccaCACTTTTAACAGTCCAATATCGATTCCTGCTCTGACATGACAAGTAATTGTCCATGAGTGTATTGGTAGCATCTGATTGTAACCAGTGAATATAGGGTACCATACAGTTCATCTGTATACTGTGGAGATCCAGCTTGTGGAAACTGGCAGCCCTTCTAAGGGTTCTCCCAGAGCTCATTTATCACTCACAACTGCTCAGAACACTCTTAATATAGCATCACACGTGTCCCTAATTTATGAGGCGAGGCAAAAGAGCTTGAAATAAAATCCTAGCTCAGCCCCACAGAAACGTGAGACGTAATTTTCATTCGATTTTGGGGAGCTTTACTATATTTGCATTCAAGACCTCCAATTGCTAGACATGCCCTAGGTTTTTGAAAGTATGAGATCATTGGTGTTGCTGAAGGATTGGGCTGAAAGTACTATTATCAGGGTGTTTGAAGAACTCATGGTATTTTAATGGTTtcactgtcttttgttttttaattattcttaaacCTGGTCTGCTTCTGCTcagagtaaattaataaataaacaaacaagggaCAACTTTGTTCTGGAA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K07296 ADIPOQ, ACDC; adiponectin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009096 True 3458 mRNA 0.40 3 25151798 25157551

Neighbor

gene id symbol gene type direction distance location
AMCG00009097 NA coding upstream 114120 25032102 ~ 25037678 (+)
AMCG00009089 NA coding upstream 193162 24950775 ~ 24958636 (+)
AMCG00009083 NA coding upstream 269856 24873573 ~ 24881942 (+)
AMCG00009087 NA coding upstream 292568 24858013 ~ 24859230 (+)
AMCG00009084 prkci,LOC106600503 coding upstream 307581 24818218 ~ 24844217 (+)
AMCG00009107 NA coding downstream 413777 25571328 ~ 25574564 (+)
AMCG00009111 LOC108428906,LOC107694655,LOC106600124,LOC107384117 coding downstream 466246 25623797 ~ 25639855 (+)
AMCG00009109 epha4b,LOC105890571,LOC108428906 coding downstream 509969 25667520 ~ 25674012 (+)
AMCG00009110 LOC103372263,LOC106600124,LOC108428906,LOC108239506,LOC102295545,LOC101472694,LOC103395911 coding downstream 535935 25693486 ~ 25716048 (+)
AMCG00009117 acvr1l,LOC107678695,LOC107602619,LOC108428902,LOC107749086 coding downstream 1340301 26497852 ~ 26509639 (+)
G54430 NA non-coding upstream 364713 24783510 ~ 24787085 (+)
G54356 NA non-coding upstream 873237 24277905 ~ 24278561 (+)
G54328 NA non-coding upstream 985737 24165790 ~ 24166061 (+)
G54264 NA non-coding upstream 1257511 23890127 ~ 23894287 (+)
G54238 NA non-coding upstream 1487146 23664157 ~ 23664652 (+)
G54547 NA non-coding downstream 14450 25172001 ~ 25172864 (+)
G54563 NA non-coding downstream 150709 25308260 ~ 25308495 (+)
G54566 NA non-coding downstream 189727 25347278 ~ 25348983 (+)
G54580 NA non-coding downstream 247119 25404670 ~ 25413822 (+)
G54608 NA non-coding downstream 358822 25516373 ~ 25517909 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 233935 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 335264 24812618 ~ 24816534 (+)
G54263 NA other upstream 1175892 23883317 ~ 23975906 (+)
G53917 NA other upstream 3857897 21292241 ~ 21293901 (+)
G53915 NA other upstream 3876444 21274611 ~ 21275354 (+)
AMCG00009104 NA other downstream 332160 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 427331 25584882 ~ 25587615 (+)
AMCG00009129 NA other downstream 1635986 26793537 ~ 26796768 (+)
AMCG00009164 NA other downstream 2456032 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 3608903 28766454 ~ 28799600 (+)

Expression


Co-expression Network