AMCG00009111 (LOC108428906,LOC107694655,LOC106600124,LOC107384117)


Basic Information

Item Value
gene id AMCG00009111
gene name LOC108428906,LOC107694655,LOC106600124,LOC107384117
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25623797 ~ 25639855 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009111
ATGCCCATTATAATGCTTTTCAGTGAAAGGAGCATCACCTGGGCAAGAATCACATTGCTGGACTCCATGTCTGCCCTGGGAGACCTGGGATGGAAGGCCTTTCCAGAAGAAGGGTGGGAGGAGATCAGTGTGATGGATGAGAGGAACACGCCCATGAGGACCTACCAGGTCTGTAACGTGATGGAGGCCAACCAGAACAACTGGTTGCGAACCAGCCACATCCCGCGTGACAGCGCCCAGCGGGTCTACATCGAGATCAAGTTCACGCTGCGTGACTGCAATAGCCTGCCAGGAGTACCAGGCACCTGCAAGGAGACCTTCAACATGTACTACTATGAGTCCAACAATGGCAACCTGTGGTTCATAAAGGAAAGCCAGTATGTCAAAATCGACACCATTGCAGCGGATGAGAGCTTCACTCAGGTGGACGTCGGGGACAGGGTGATGAAGCTTAACACCGAGGTGCGGGATATCAGCAACCTGAGCAAGAAGGGCTTTTACCTAGCCTTCCAGGACGTGGGGGCCTGCATCGCCTTGGTTTCTGTCAGGGTGTACTATAAGAAATGTCCCCTGACTGTGCTCAACCTGGCCCAATTCCCTGACACCGTCACGGGTGGGGACTCTGCCCTGGTGGAGGTGCGGGGATCCTGCGTCAACAATTCGGAGGAGTTTGACACGCCCAAGATGTACTGCAGTGCTGATGGGGGTTGGCTGGTGCCCATTGGCCGCTGCGTCTGTAAACCTGGCTTTGAGGAACGCAAGGAGATCTGCCAATATCTGACCCTCGAAGAGCTGCAGTCCCACATCTATACTGTCTTCGTCTGTCACAACCAATTACTGCTGCAGCATAGAAATGAGTGCCTGCTGAGGTACCTGTCAGTTCAGTACACTCCTGCCCCATGA

Function

NR:

description
PREDICTED: ephrin type-A receptor 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009111 True 903 mRNA 0.54 4 25623797 25639855

Neighbor

gene id symbol gene type direction distance location
AMCG00009107 NA coding upstream 49233 25571328 ~ 25574564 (+)
AMCG00009096 NA coding upstream 466246 25151798 ~ 25157551 (+)
AMCG00009097 NA coding upstream 586119 25032102 ~ 25037678 (+)
AMCG00009089 NA coding upstream 665161 24950775 ~ 24958636 (+)
AMCG00009083 NA coding upstream 741855 24873573 ~ 24881942 (+)
AMCG00009109 epha4b,LOC105890571,LOC108428906 coding downstream 27665 25667520 ~ 25674012 (+)
AMCG00009110 LOC103372263,LOC106600124,LOC108428906,LOC108239506,LOC102295545,LOC101472694,LOC103395911 coding downstream 53631 25693486 ~ 25716048 (+)
AMCG00009117 acvr1l,LOC107678695,LOC107602619,LOC108428902,LOC107749086 coding downstream 857997 26497852 ~ 26509639 (+)
AMCG00009115 NA coding downstream 882009 26521864 ~ 26528491 (+)
AMCG00009116 NA coding downstream 892593 26532448 ~ 26538242 (+)
G54609 NA non-coding upstream 102483 25521019 ~ 25521314 (+)
G54608 NA non-coding upstream 105888 25516373 ~ 25517909 (+)
G54580 NA non-coding upstream 209975 25404670 ~ 25413822 (+)
G54566 NA non-coding upstream 274814 25347278 ~ 25348983 (+)
G54563 NA non-coding upstream 315302 25308260 ~ 25308495 (+)
G54705 NA non-coding downstream 767682 26407537 ~ 26407814 (+)
G54711 NA non-coding downstream 849294 26489149 ~ 26491161 (+)
G54724 NA non-coding downstream 898464 26538319 ~ 26540200 (+)
G54777 NA non-coding downstream 1010627 26650482 ~ 26660346 (+)
G54806 NA non-coding downstream 1147969 26787824 ~ 26814492 (+)
AMCG00009108 NA other upstream 36182 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 130224 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 705934 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 807263 24812618 ~ 24816534 (+)
G54263 NA other upstream 1647891 23883317 ~ 23975906 (+)
AMCG00009129 NA other downstream 1153682 26793537 ~ 26796768 (+)
AMCG00009164 NA other downstream 1973728 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 3126599 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 3289037 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 3463753 29103608 ~ 29108227 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015772 epha4b coding NC_007113.7 CM002886.2 40294313 ~ 40514151 (+)
grasscarp (Ctenopharyngodon idella) CI01000190_00818872_00919765 EK1, EPHA4B coding CI01000190 null 818872 ~ 919765 (-)