G54705


Basic Information

Item Value
gene id G54705
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26407537 ~ 26407814 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU68374
gcaatttgagctacagtagctcgtctgttggatcggaccacacgggccagccttcgctccccacgtgcatcaatgagccttggccgcccatgaccctgtcgccagttcaccgcttttccttccttggaccacttttgataggtactgaccactgcagactgggaacaccccacaagagctgcagttttggagatgctctgacccagtcatctagccatcacaatttggctcttgtcaaagtcgctcagatccttacgcttgcccatttttcctgcttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68374 True 278 lncRNA 0.54 1 26407537 26407814

Neighbor

gene id symbol gene type direction distance location
AMCG00009110 LOC103372263,LOC106600124,LOC108428906,LOC108239506,LOC102295545,LOC101472694,LOC103395911 coding upstream 691489 25693486 ~ 25716048 (+)
AMCG00009109 epha4b,LOC105890571,LOC108428906 coding upstream 733525 25667520 ~ 25674012 (+)
AMCG00009111 LOC108428906,LOC107694655,LOC106600124,LOC107384117 coding upstream 767682 25623797 ~ 25639855 (+)
AMCG00009107 NA coding upstream 832973 25571328 ~ 25574564 (+)
AMCG00009096 NA coding upstream 1249986 25151798 ~ 25157551 (+)
AMCG00009117 acvr1l,LOC107678695,LOC107602619,LOC108428902,LOC107749086 coding downstream 90038 26497852 ~ 26509639 (+)
AMCG00009115 NA coding downstream 114050 26521864 ~ 26528491 (+)
AMCG00009116 NA coding downstream 124634 26532448 ~ 26538242 (+)
AMCG00009123 pak2 coding downstream 157874 26565688 ~ 26575442 (+)
AMCG00009122 fam168b,LOC107560647,LOC107590359 coding downstream 228673 26636487 ~ 26643471 (+)
G54609 NA non-coding upstream 886223 25521019 ~ 25521314 (+)
G54608 NA non-coding upstream 889628 25516373 ~ 25517909 (+)
G54580 NA non-coding upstream 993715 25404670 ~ 25413822 (+)
G54566 NA non-coding upstream 1058554 25347278 ~ 25348983 (+)
G54563 NA non-coding upstream 1099042 25308260 ~ 25308495 (+)
G54711 NA non-coding downstream 81335 26489149 ~ 26491161 (+)
G54724 NA non-coding downstream 130505 26538319 ~ 26540200 (+)
G54777 NA non-coding downstream 242668 26650482 ~ 26660346 (+)
G54806 NA non-coding downstream 380010 26787824 ~ 26814492 (+)
G54812 NA non-coding downstream 414482 26822296 ~ 26824929 (+)
AMCG00009108 NA other upstream 819922 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 913964 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 1489674 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 1591003 24812618 ~ 24816534 (+)
G54263 NA other upstream 2431631 23883317 ~ 23975906 (+)
AMCG00009129 NA other downstream 385723 26793537 ~ 26796768 (+)
AMCG00009164 NA other downstream 1205769 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 2358640 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 2521078 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 2695794 29103608 ~ 29108227 (+)

Expression


Co-expression Network