G54609


Basic Information

Item Value
gene id G54609
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25521019 ~ 25521314 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU68264
AATTTCCAGATACTACAGTTATGTATCCAACCACACAGATCACTGTGAAGGTGAAAAGCTTGTTGCGCCagttcattttctttgattCTTTCAGCAGCTCAAACTGTTATTTTGCAGTAGATAGTAGGGAGTAGTgggttttatttgctttatgtGAATGCAATATATggcatggaaaataaaaataaattaactagaAATTACACAGGACACATGTGCGTCATGCAAAgttgatttttttcttcctgcaaTGACAAGGTGTGAAAAGTGGCTTGGACGCCTGGTTTCCAAGACAC

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU68264 True 296 lncRNA 0.38 1 25521019 25521314

Neighbor

gene id symbol gene type direction distance location
AMCG00009096 NA coding upstream 363468 25151798 ~ 25157551 (+)
AMCG00009097 NA coding upstream 483341 25032102 ~ 25037678 (+)
AMCG00009089 NA coding upstream 562383 24950775 ~ 24958636 (+)
AMCG00009083 NA coding upstream 639077 24873573 ~ 24881942 (+)
AMCG00009087 NA coding upstream 661789 24858013 ~ 24859230 (+)
AMCG00009107 NA coding downstream 50014 25571328 ~ 25574564 (+)
AMCG00009111 LOC108428906,LOC107694655,LOC106600124,LOC107384117 coding downstream 102483 25623797 ~ 25639855 (+)
AMCG00009109 epha4b,LOC105890571,LOC108428906 coding downstream 146206 25667520 ~ 25674012 (+)
AMCG00009110 LOC103372263,LOC106600124,LOC108428906,LOC108239506,LOC102295545,LOC101472694,LOC103395911 coding downstream 172172 25693486 ~ 25716048 (+)
AMCG00009117 acvr1l,LOC107678695,LOC107602619,LOC108428902,LOC107749086 coding downstream 976538 26497852 ~ 26509639 (+)
G54608 NA non-coding upstream 3110 25516373 ~ 25517909 (+)
G54580 NA non-coding upstream 107197 25404670 ~ 25413822 (+)
G54566 NA non-coding upstream 172036 25347278 ~ 25348983 (+)
G54563 NA non-coding upstream 212524 25308260 ~ 25308495 (+)
G54547 NA non-coding upstream 348155 25172001 ~ 25172864 (+)
G54705 NA non-coding downstream 886223 26407537 ~ 26407814 (+)
G54711 NA non-coding downstream 967835 26489149 ~ 26491161 (+)
G54724 NA non-coding downstream 1017005 26538319 ~ 26540200 (+)
G54777 NA non-coding downstream 1129168 26650482 ~ 26660346 (+)
G54806 NA non-coding downstream 1266510 26787824 ~ 26814492 (+)
AMCG00009104 NA other upstream 27446 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 603156 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 704485 24812618 ~ 24816534 (+)
G54263 NA other upstream 1545113 23883317 ~ 23975906 (+)
G53917 NA other upstream 4227118 21292241 ~ 21293901 (+)
AMCG00009108 NA other downstream 63568 25584882 ~ 25587615 (+)
AMCG00009129 NA other downstream 1272223 26793537 ~ 26796768 (+)
AMCG00009164 NA other downstream 2092269 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 3245140 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 3407578 28928892 ~ 29011768 (+)

Expression


Co-expression Network