AMCG00009122 (fam168b,LOC107560647,LOC107590359)


Basic Information

Item Value
gene id AMCG00009122
gene name fam168b,LOC107560647,LOC107590359
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26636487 ~ 26643471 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009122
GTGCGCACAGGCGAGCGGCGGTGCCGGCAGTCGGAAGTGACGCGTGTTGGTGTAGGTTTGGTTGGTGCGCAGCAATCCCAGACAGAGAGGAAAGGGGAGACacaagagagaagaaaaaatatatttcagtaccTGAGGGAGAAAGACAGAGCGAGAAAAATCGGGCGATCGTTTGAAGAAGGCTGACAAACGTTGTAGCCAACCAGGGGATTTTCTGGGATCAATAAATTGTCTTGCAGTATGAACCCTGTCTACAGCCCTGCACCAACAGGGGTCCCGTATCCAAACCCAAAGGGAATTGGGTACCCAGCTGGATTTCCAGTAGGTTATGCTGCAGCTGCTCCTGCTTACTCCCCCAACATGTACCCTGGAGCCAACACAGCTTTTCAGACAGGCTACACTCCAGGCACGCCATACAAGGTATCCTGCTCCCCAACCACCGGTGCTGTCCCCCCTTACTCCTCTTCACCTAACCCCTACCAGACCGCCGTCTACCCTGTGAGAAGTGCCTACCCCCAGCAGAATCCCTATGCGCAGCAGCAAGGCACTTACTACACACAACCTCTGTATGCAGCACCCCCCCATGTCATTCACCACACCACGGTGGTCCAGCCTAATGGCATGCCAGCCGCGATGTATGCCCCCCAGATCCCACCACCTCGAGGCAACGGTGTCACCATGGGCATGGTGGCAGGGACCACTATGGCAATGTCAGCTGGTGAGCAGGGCGTTTTTAAGGACTTTGTTGACGACCCATTCCCCGACTCCAGTAGCCCCTCACCAAGTCACAATGCCCACATACCGGCCCCCTGGCACACCCACCTACAGCTATGTCCCCCCGCAGTGGTGATCTGTTTGGCAGtgtaa

Function

symbol description
fam168b Predicted to be located in axon; perinuclear region of cytoplasm; and plasma membrane. Predicted to be integral component of membrane. Orthologous to human FAM168B (family with sequence similarity 168 member B).

NR:

description
PREDICTED: myelin-associated neurite-outgrowth inhibitor isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009122 True 867 mRNA 0.56 7 26636487 26643471

Neighbor

gene id symbol gene type direction distance location
AMCG00009123 pak2 coding upstream 61045 26565688 ~ 26575442 (+)
AMCG00009116 NA coding upstream 98245 26532448 ~ 26538242 (+)
AMCG00009115 NA coding upstream 107996 26521864 ~ 26528491 (+)
AMCG00009117 acvr1l,LOC107678695,LOC107602619,LOC108428902,LOC107749086 coding upstream 126848 26497852 ~ 26509639 (+)
AMCG00009110 LOC103372263,LOC106600124,LOC108428906,LOC108239506,LOC102295545,LOC101472694,LOC103395911 coding upstream 920439 25693486 ~ 25716048 (+)
AMCG00009128 srprb coding downstream 139066 26782537 ~ 26785790 (+)
AMCG00009138 NA coding downstream 158003 26801474 ~ 26801849 (+)
AMCG00009130 neu4,LOC106581489,LOC102793282 coding downstream 186728 26830199 ~ 26836417 (+)
AMCG00009139 NA coding downstream 255138 26898609 ~ 26903272 (+)
AMCG00009140 psmd2,LOC106613117 coding downstream 326414 26969885 ~ 26981851 (+)
G54724 NA non-coding upstream 96287 26538319 ~ 26540200 (+)
G54711 NA non-coding upstream 145326 26489149 ~ 26491161 (+)
G54705 NA non-coding upstream 228673 26407537 ~ 26407814 (+)
G54609 NA non-coding upstream 1115173 25521019 ~ 25521314 (+)
G54608 NA non-coding upstream 1118578 25516373 ~ 25517909 (+)
G54777 NA non-coding downstream 7011 26650482 ~ 26660346 (+)
G54806 NA non-coding downstream 144353 26787824 ~ 26814492 (+)
G54812 NA non-coding downstream 178825 26822296 ~ 26824929 (+)
G54833 NA non-coding downstream 205751 26849222 ~ 26851003 (+)
G54880 NA non-coding downstream 339372 26982843 ~ 26984157 (+)
AMCG00009108 NA other upstream 1048872 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 1142914 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 1718624 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 1819953 24812618 ~ 24816534 (+)
G54263 NA other upstream 2660581 23883317 ~ 23975906 (+)
AMCG00009129 NA other downstream 150066 26793537 ~ 26796768 (+)
AMCG00009164 NA other downstream 970112 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 2122983 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 2285421 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 2460137 29103608 ~ 29108227 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000082_02778967_02781492 FAM168B, FAM168B.S coding CI01000082 null 2778525 ~ 2781492 (+)