AMCG00009130 (neu4,LOC106581489,LOC102793282)


Basic Information

Item Value
gene id AMCG00009130
gene name neu4,LOC106581489,LOC102793282
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26830199 ~ 26836417 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009130
AACAAAGGGAGAGCTACCTGGCTGGAGAGTAAAATCAGAGTAAGGGTTGTGACTAGCCATTGGGGGGGAGTTCAACATTGGGAAACCTACGATGGGATCTCCTTATTTCCCGGCTCGTACTGTGCTGTTTCGGAAAGAGACGAGTGGCGTTACATACCGGATCCCGGCACTGCTCTACCTGCCCAGCTCTGCCACCTTCCTGGCCTTCTGCGAGGAGCGGCTCACCCCTGACGACGCCCAGGCAGAACTGCTAGTTATGCGCAGAGGAACCTTCTACCGCAATTATGTGGAGTGGGAAGACATGAGGGCGCTGGGCACAGCCCGTCTGCAGGGGCACCGCTCCATGAACCCCTGTCCTGTGTATGACGAGTTCACTGGCACCGTGTTCCTCTTCTTCATTGCTGTACTAGGCCACACCCCTGAGGCCCTGCAGCTCATCACCGGCAAGAACGTCACACGCCTCTGCTACGTCTCCAGCCAGGACCAGGGCCGCAGCTGGAGCGCCGTCACCGACCTCACCCAGCGCACCATTGGCCTCGCCATCAAGGAGTGGGCTACCTTTGCTCTGGGGCCTGGCCACGGCATTCAGCTTAAATCAGGCCGTCTCCTGATTCCAGCATATGCCTACCACATTGACTGCCGTGAGTGCTTTGGCAAGATGTGCCTCACCACGCCACACTCCTTCTGCTTCCACAGCGACACCCACGGCCGCACCTGGCGCTTCGGGGAGTTTGTGCCCAACCTGGCGACGGTGGAGTGCCAGATAGTGTCTGTGGACCAGGAAGACGGCACCAACGTGCTGTACTGCAACGCCCGCAGCACCCTGGGGTACCGTGTGCAGGCGTTGAGCATGGACGATGGTGCCGTGTTCCAAGAGGGGCAGCTGGTGCAGAAGCTGGTGGAGCCGCCCCACGGGTGTCATGGAAGCGTGGTGGGGTTCCCGGCCCCTTTTTTTACCACCCCATTCCGAACGTTGCACCGCACCCTCAGGAGTCTGGATCAGGTATTCCACAGCCTGCTGAGATCCTACCGGAGCCCCAAGCTTGACAGTGACCGTGGAGGAGCCCCTACTGCCAAACCTGCCTGCACCTCAGAATGTCCTCAGCCTAGTCCAATTCCCAGCACAAAGTTCCTCACTCCCACCTGGGTGGCTATGGCCAACAGCAGCctgtgtgcatttaaaatcaaccaTCTGTGTGAGAATGCTACTAGAGTTTAG

Function

symbol description
neu4 Enables exo-alpha-sialidase activity. Acts upstream of or within ganglioside metabolic process. Located in endoplasmic reticulum. Is expressed in several structures, including heart; integument; lens; pleuroperitoneal region; and solid lens vesicle. Orthologous to human NEU4 (neuraminidase 4).

NR:

description
PREDICTED: sialidase-4-like

GO:

id name namespace
GO:0001573 ganglioside metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
K12357 NEU2_3_4; sialidase-2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009130 True 1219 mRNA 0.59 5 26830199 26836417

Neighbor

gene id symbol gene type direction distance location
AMCG00009138 NA coding upstream 28350 26801474 ~ 26801849 (+)
AMCG00009128 srprb coding upstream 44409 26782537 ~ 26785790 (+)
AMCG00009122 fam168b,LOC107560647,LOC107590359 coding upstream 186728 26636487 ~ 26643471 (+)
AMCG00009123 pak2 coding upstream 254757 26565688 ~ 26575442 (+)
AMCG00009116 NA coding upstream 291957 26532448 ~ 26538242 (+)
AMCG00009139 NA coding downstream 62192 26898609 ~ 26903272 (+)
AMCG00009140 psmd2,LOC106613117 coding downstream 133468 26969885 ~ 26981851 (+)
AMCG00009145 NA coding downstream 158541 26994958 ~ 27032957 (+)
AMCG00009146 NA coding downstream 200912 27037329 ~ 27058960 (+)
AMCG00009144 NA coding downstream 241397 27077814 ~ 27087858 (+)
G54812 NA non-coding upstream 5270 26822296 ~ 26824929 (+)
G54806 NA non-coding upstream 15707 26787824 ~ 26814492 (+)
G54777 NA non-coding upstream 169853 26650482 ~ 26660346 (+)
G54724 NA non-coding upstream 289999 26538319 ~ 26540200 (+)
G54711 NA non-coding upstream 339038 26489149 ~ 26491161 (+)
G54833 NA non-coding downstream 12805 26849222 ~ 26851003 (+)
G54880 NA non-coding downstream 146426 26982843 ~ 26984157 (+)
G54928 NA non-coding downstream 260120 27096537 ~ 27096773 (+)
G54936 NA non-coding downstream 274463 27110880 ~ 27117923 (+)
G54948 NA non-coding downstream 477538 27313955 ~ 27317157 (+)
AMCG00009129 NA other upstream 33431 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 1242584 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 1336626 25489711 ~ 25493573 (+)
AMCG00009088 LOC104966806,LOC108444346 other upstream 1912336 24898116 ~ 24917863 (+)
AMCG00009085 NA other upstream 2013665 24812618 ~ 24816534 (+)
AMCG00009164 NA other downstream 777166 27613583 ~ 27626011 (+)
AMCG00009204 NA other downstream 1930037 28766454 ~ 28799600 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 2092475 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 2267191 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 2334906 29171323 ~ 29174731 (+)

Expression


Co-expression Network