AMCG00009647


Basic Information

Item Value
gene id AMCG00009647
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43436990 ~ 43444420 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009647
ATGGGCCCTATGCATGCAACATGGAGGTTCCACTCCAGGCTGTCCCACTACATGATCTCAATAAGACGCTTCCTGGTGGCAACTGACAACTGTCTACAGAGGTGCCTGCGTCTGGAGGACACCACGTTTCGCAGGAAGAAGCCCATCTCCTCCAGGAACAAGGCCAGCAGGATGAGGGCCATTGCACCGGGCAGCAGGAACAACCACAGCTCCTTCCTAATCACTGTAGTGGGGGGGGGAACAGTCACTTACTCCCTCCGCAGTGGGCTGCcattgtttgtggttttctgcGGCAATGATTTACTTGCAAACCTGTTCTTTACTGTCTTTTTGAGAGCCCTGACCCTGACCTTTGAAGAACTCGGCAGACAAGAGGATCTCTGCTCCCGTCATGTTGCAGTTGTCATTCCGCGTCATCTCCCCGGCTCTCTTGTAGGTAACAAATCGGACAAGAAATTCACCCCCAAGGACAGCCGAAGGGAGAGAAGCAATAACTTCCAGGCCTTTGTCAAGATGGCTCTGGAGACACTACTGGGTTCCTGTCGGCGTAAACATAGGGGACCCAGGGGAAAGCAGGGCTGAGAAATTATGCCCCATTTCCATCCCTGCACCCAATCAAAAGCACCCCGCCCCCCCTCCACGCCACCGCCACAGGCCCAGGTCTCCGTCAGTCTACATCTTCCCGATTCCGCCCCTCCCTCCTGCTGGTATGAACCCCAAACATCAACATGGGCTGATCGAGCTCAGCCAATAGCAAGCCTGACTCTGCCTGCTTGGTCAATGGACAATCTAGCCCTGCCTTATCACCTGATACTCGACTCCGCCCCTTCGAACAGCCGGATTGTCTGTCCCCTGCCTGTcctgtaaataaaaactatttcatAAAGCATTCTGTTGTGTTACTTTTCATGACACCATAAgttcataaatacatatgtcAGCTAGAGGGTAGTTTGCAATGTAGGGATCACATTCATTAcaagataataaat
>TU72836
GTTCGGGGTTGCATAGATTTAAGCCGTTCTTTCCGGAAGGGGCCCTGGTGACGCCGGCATTGAGTGAAGCGGTCCATAAATGCGGGACGCGGCAGGGCTGGTGGCActtcattttctaaataaaggACTTAGGAGAGCAGCCAAAATGCCAGGAGCAAAAGGTAACAAATCGGACAAGAAATTCACCCCCAAGCAACCACAGAGCCCCAAGGATCAACCGAAGAAAGGTGATCAGAAAGGAGATGATAACAAAAAGCAAGGAGGACAGCCGAAGGGAGAGAAGCAATAACTTCCAGGCCTTTGTCAAGATGGCTCTGGAGACACTACTGGGTTCCTGTCGGCGTAAACATAGGGGACCCAGGGGAAAGCAGGGCTGAGAAATTATGCCCCATTTCCATCCCTGCACCCAATCAAAAGCACCCCGCCCCCCCTCCACGCCACCGCCACAGGCCCAGGTCTCCGTCAGTCTACATCTTCCCGATTCCGCCCCTCCCTCCTGCTGGTATGAACCCCAAACATCAACATGGGCTGATCGAGCTCAGCCAATAGCAAGCCTGACTCTGCCTGCTTGGTCAATGGACAATCTAGCCCTGCCTTATCACCTGATACTCGACTCCGCCCCTTCGAACAGCCGGATTGTCTGTCCCCTGCCTGTcctgtaaataaaaactatttcatAAAGCA

Function

GO:

id name namespace
GO:0009799 specification of symmetry biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0061371 determination of heart left/right asymmetry biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009647 True 992 mRNA 0.52 5 43436990 43444420
TU72836 False 684 lncRNA 0.53 5 43439399 43444317

Neighbor

gene id symbol gene type direction distance location
AMCG00009646 NA coding upstream 12140 43416831 ~ 43424850 (+)
AMCG00009640 NA coding upstream 118489 43315628 ~ 43318501 (+)
AMCG00009635 fam50a coding upstream 163618 43267927 ~ 43273372 (+)
AMCG00009634 NA coding upstream 170091 43258520 ~ 43266899 (+)
AMCG00009639 NA coding upstream 183928 43252202 ~ 43253062 (+)
AMCG00009656 NA coding downstream 227349 43671769 ~ 43720150 (+)
AMCG00009654 NA coding downstream 292177 43736597 ~ 43740863 (+)
AMCG00009653 NA coding downstream 299034 43743454 ~ 43748128 (+)
AMCG00009655 tbc1d25,LOC104943506 coding downstream 307063 43751483 ~ 43756359 (+)
AMCG00009658 camkvl,LOC101077320,LOC105006803 coding downstream 390463 43834883 ~ 43852529 (+)
G58214 dedd,LOC108411641,LOC107758014,LOC107699191,LOC107603111 non-coding upstream 112411 43318916 ~ 43324579 (+)
G58215 NA non-coding upstream 125928 43309860 ~ 43311062 (+)
G58195 NA non-coding upstream 187349 43249403 ~ 43249641 (+)
G58178 NA non-coding upstream 223962 43212710 ~ 43213028 (+)
G58148 NA non-coding upstream 426940 43006601 ~ 43010050 (+)
G58291 NA non-coding downstream 233931 43678351 ~ 43680953 (+)
G58304 NA non-coding downstream 429361 43873781 ~ 43875723 (+)
G58317 NA non-coding downstream 465168 43909588 ~ 43915760 (+)
G58319 NA non-coding downstream 477054 43921474 ~ 43926631 (+)
G58467 NA non-coding downstream 725065 44169485 ~ 44169789 (+)
G57830 NA other upstream 1358749 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 1837866 41596229 ~ 41599124 (+)
G57604 NA other upstream 2442331 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 3331938 40086474 ~ 40105052 (+)
G57430 NA other upstream 3487790 39948006 ~ 39949200 (+)
G58324 NA other downstream 488532 43932952 ~ 43935762 (+)
G58522 NA other downstream 942077 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1117357 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 1140142 44584562 ~ 44603609 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other downstream 1188330 44632750 ~ 44651967 (+)

Expression


Co-expression Network