AMCG00009655 (tbc1d25,LOC104943506)


Basic Information

Item Value
gene id AMCG00009655
gene name tbc1d25,LOC104943506
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43751483 ~ 43756359 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009655
ATGGAGAGGGAGATACAATTGTGCAAGATAGAGAGAAgtgagggggaagagagaaaggagagcaTGTTGGGGAAGAGGAATTTTGGGATCAGCTACTTATCCCGGGATAAGCAAGGGGTGGAGGTGTACCTCTCTCTCATGTCAGACTGGGACCTGGACGCTGCCTTCGTGAGCGCTGCCAAACCCTACCTGCAGCTGAAGATCGACATCAAGCCAGCGGAAGACAGCCCCCTGCTGGAGGACTGGGATATCATCAGCCCCAAAGATGTCATCAGCTCTGATCTACTTCCGGGTGAGAGGAGGTCCCTGGCGGCTGCTGCCCTGCCCTTCACGCAGTCACTGATCTCCCAGgtgggGAAGACTCTCTCCCGGGTGCAGCAGGCCCTGAGCTGGTCCTACGGGGAGGACGTGAAGCCCTTCAAGCCGCCACTGAGCGACTCTGAGTTCCACAGCTACCTCAGCCACCTGGGCCAGCTGACCCGGCCGGAGGAGCTGAGACTGCGCATCTACCACGGTGGCGTGGAGCCCTCACTGCGCAAGGTGGTGTGGCGGTACCTGCTCAATGTCTATCCAGACGGCCTGACGGGCCAAGAACGCATGGACTACATGAAGAGGAAGACCCGGGAGTACGACCGGCTGAAGGGAGAGTGGAGCTCTAGGACCAGCCCGGAGGACCTGGAGTTCATCAGGGGCAACGTGCTGAAGGACGTGCTGAGGACAGACCGGGCCCACCCTTACTACGCTGGCTCAGAGGACAGCCCCCATCTCACCGCCCTCACTGACCTGCTCACCACCTATGCCATCACCCACCCGCAGgTGTCCTACTGCCAGGGCATGAGTGACATTGCCTCGCCCATCTTGGCGGTGATGGACAACGAGGCCCATGCCTTCATCTGCTTCTGCGGCATCATGAAGCGCCTGGAGGGTAACTTCCGTCCTGACGGCCGCCTCATGTCCGTCAAGTTCCAGCACCTCAAGCTGCTCCTGCGCTACTCCGACCCCGAGTTCTACGCCTACCTGGTATCGCGGGGCGCGGACGACCTCTTCTTCTGTTACCGCTGGCTGCTGCTGGAGCTCAAGCGGGAGTTCGCATTTGAGGACGCCCTGAGGATGTTGGAGGTCACCtggagctccctgccccccgaTCCTCCGGAGACCGAGGTGGAGCTGCTGGGCCCGCCACTGGAGGAGGATGAGGCGGCCTCGGAACTGGAAAGGAGGCGCAAGGAGAGGCAGAGGCGGAGGTATATGCTGCGACCCTCCCGGGAGGAGCTGGTGGAGCCTTCAGGGGGGCGGCAGGAAGGGGATGGAGGGAGGCAGGTGGCGATGGGAGAGGCGGGGCCcaggggagaaggagaaggggaaggagaaggGGAAAGGGAGACTGAAAGGGCAGGGGTGATGTCTGTGTCGGGGCCTCTTCAAGATGGGGACGCGGCACAGGCCCGAGGGAAGGGCAGCTCAGTCCCTCACTTGGGCAAGCAGTCCAGCTTTGGTGAGTTCAAGTACTACAGCGCCCGTCACGGAGACAGTTTCGACATGGATGAAGAGCGTTGCCCTAACCTTTCCCCTCTGCGCGCTCTCCCGACCACCCGCCCCCCAGTCCCCTCCCGGCAGcccacagaggacagtgaggAGGACCCCGGGGAGAGGGAGCCTCTGATCAAGTCCGATGATAAGCCCTCGACTCCAGCCAGCACCGGGAGGAGATCACCCAATGGGCAAACAGCTTCTCCGGCCTCCCCTTTCCTTCCCTGCTTGACTAATTGGAGGAACACCGCTTCCCCTTCCCCCTGCCCCTCCCCATCACTAGCAAATGGGAGAGCAGCCTCCCCGTCCACGCCCACAGGCAAGGCAGCCCTTTCCTCCCCTTCCCTCACCAATGGGAGAGCTTCTCCGGCTCCGGCTACACCCACAGGGAGGCCCAGCCCTTCTTCTTCTCTGACCAACGGGAGAGTTAACTCCCCGGCCACGCCCACCGCAACCCCCAGCAAGCCTGCTATCTCCTCCCCTTCCCTCGGCAACAGCAGAGTGGCATCTCCAGCTACCACAAGATCGCTGGTATCTTCCCCTGTGTTGTCCAATGGGCGGGCAGGCTCCCCGTCCACCCCCACAGGAAAATCCCTGCTCTCCTCCCCTTGCACCGGGACCAGATCCCCCAGAGCAGCCACCCCCAGCACACCGGGGCCGGACAAAGAGGACAAGCCAGCCCCCACACCCTCGCTGCCCCCTCCCCAGGAGTTCGGCAAAGGCAACCCTTTCATGCTCTTCCTATGCCTGTCCATCCTCCTGGAGCACCGTGACCACATCGTCAAGAACAACCTGGATTACAACGAGCTGGCCATGCACTTCGACCGACTTGTCCGGAAGCACAACTTGAACCGGGTGTTGCAGCGAGCCAAGGCCCTCTTCGCGGACTACCTCCAGAGCGAGGTTTGGGACTCGGAGGAGGGAGATGAGGCCAGCTCCGACTCCCCGGCCGCCCACACCCCCCAGCCCCAACCACCGCCGCCTCCTCCTAACTCCACCTACAATCTGGCTGCTATTgcctctccctcctccacctcttcctcctcctcttctgcctCCTGA

Function

symbol description
tbc1d25 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity; intracellular protein transport; and regulation of autophagosome maturation. Predicted to be active in autophagosome. Orthologous to human TBC1D25 (TBC1 domain family member 25).

NR:

description
PREDICTED: TBC1 domain family member 25

GO: NA

KEGG:

id description
K24799 TBC1D25; TBC1 domain family member 25

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009655 True 2592 mRNA 0.62 6 43751483 43756359

Neighbor

gene id symbol gene type direction distance location
AMCG00009653 NA coding upstream 3355 43743454 ~ 43748128 (+)
AMCG00009654 NA coding upstream 10620 43736597 ~ 43740863 (+)
AMCG00009656 NA coding upstream 31333 43671769 ~ 43720150 (+)
AMCG00009646 NA coding upstream 326633 43416831 ~ 43424850 (+)
AMCG00009640 NA coding upstream 432982 43315628 ~ 43318501 (+)
AMCG00009658 camkvl,LOC101077320,LOC105006803 coding downstream 78524 43834883 ~ 43852529 (+)
AMCG00009659 uba1 coding downstream 102722 43859081 ~ 43873704 (+)
AMCG00009662 NA coding downstream 123670 43880029 ~ 43890471 (+)
AMCG00009660 NA coding downstream 141507 43897866 ~ 43902765 (+)
AMCG00009661 NA coding downstream 183934 43940293 ~ 43951629 (+)
G58291 NA non-coding upstream 70530 43678351 ~ 43680953 (+)
G58214 dedd,LOC108411641,LOC107758014,LOC107699191,LOC107603111 non-coding upstream 426904 43318916 ~ 43324579 (+)
G58215 NA non-coding upstream 440421 43309860 ~ 43311062 (+)
G58195 NA non-coding upstream 501842 43249403 ~ 43249641 (+)
G58178 NA non-coding upstream 538455 43212710 ~ 43213028 (+)
G58304 NA non-coding downstream 117422 43873781 ~ 43875723 (+)
G58317 NA non-coding downstream 153229 43909588 ~ 43915760 (+)
G58319 NA non-coding downstream 165115 43921474 ~ 43926631 (+)
G58467 NA non-coding downstream 413126 44169485 ~ 44169789 (+)
G58510 NA non-coding downstream 568792 44325151 ~ 44325573 (+)
AMCG00009647 NA other upstream 307063 43436990 ~ 43444420 (+)
G57830 NA other upstream 1673242 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 2152359 41596229 ~ 41599124 (+)
G57604 NA other upstream 2756824 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 3646431 40086474 ~ 40105052 (+)
G58324 NA other downstream 176593 43932952 ~ 43935762 (+)
G58522 NA other downstream 630138 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 805418 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 828203 44584562 ~ 44603609 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other downstream 876391 44632750 ~ 44651967 (+)

Expression


Co-expression Network