AMCG00009703 (plxna3)


Basic Information

Item Value
gene id AMCG00009703
gene name plxna3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44641950 ~ 44642771 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009703
ATGCAGGAGAGAAGATTTATGGCAGTGGGTCTGGCAGTGGCATCAAATTTAACGTGGCAGTTGTGTCCACAGcagaagaaacaacaacagactCCAGgacgcaaaaaaaaaaccaccgCTCCGCGGCCTGATTATGTTCTCAGTGTTAAAGAGATAACAGATCACACTAAAGATCGCTTACCGTGCCGCGCGGCTGAGGAGGCGGGACGGCACACCGCCCCTCGACTGCGGGCAACGGCTCCCGAGCGGGCCCGTGGTCTGAAGACAAGGCCGCCCTGTCCCCCCTTGTGTTGTCACTCTGGCCTGGAAGCACAGTCCCGGCGCTGTGAGTGTGCTGTGAGTGGCGGTGATATTTGGTGCCGAGAGAAGGAGAGTCGCAGGACAACAAGAGGTGGCCAGggctgtCCCCAGATCCTGCCCACCACAGATATCCTGGTGGCCGCGGGGATGGTGCGGCCGATCACGCTGCGTGCCCGCAACCTACCGCAGCCGCAGTCGGGCCAGAAGAACTACGAGTGCGTCTTCCACATCCAGGGCAAGGTGCAGCGCGTGCCGGCCGTGCGCTTCAACAGCTCCTGCATCCAGTGCCAGAACACCTCGGTGAGTGAGGGGACCCTGGGCCTGGACCGCCGTGTCCTCGGTGTGCCATGTGCTGTCTTGTCCTCAGTGCTGCGTCTGTAG

Function

symbol description
plxna3 Enables identical protein binding activity. Acts upstream of or within several processes, including axonogenesis; branching morphogenesis of a nerve; and embryonic skeletal joint morphogenesis. Located in membrane. Is expressed in fin; nervous system; otic vesicle; and post-vent region. Orthologous to human PLXNA3 (plexin A3).

NR:

description
PREDICTED: plexin-A3

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009703 True 681 mRNA 0.61 4 44641950 44642771

Neighbor

gene id symbol gene type direction distance location
AMCG00009699 NA coding upstream 139511 44492695 ~ 44502439 (+)
AMCG00009695 NA coding upstream 151871 44483967 ~ 44490079 (+)
AMCG00009696 flna,LOC108436314,LOC107712729,LOC101154674,LOC107570276 coding upstream 159889 44450103 ~ 44482061 (+)
AMCG00009698 NA coding upstream 199894 44439574 ~ 44442056 (+)
AMCG00009689 NA coding upstream 255778 44382557 ~ 44386172 (+)
AMCG00009702 NA coding downstream 5245 44648016 ~ 44653748 (+)
AMCG00009701 plxna3,LOC106572068 coding downstream 18043 44660814 ~ 44666978 (+)
AMCG00009711 NA coding downstream 67068 44709839 ~ 44712088 (+)
AMCG00009708 otud5,LOC106571839 coding downstream 95908 44738679 ~ 44746329 (+)
AMCG00009707 LOC107653423,LOC107584890,LOC107743096,LOC107674336,LOC107734533 coding downstream 121265 44764036 ~ 44768228 (+)
G58527 NA non-coding upstream 158703 44413272 ~ 44483247 (+)
G58513 NA non-coding upstream 281888 44328271 ~ 44360062 (+)
G58510 NA non-coding upstream 316377 44325151 ~ 44325573 (+)
G58467 NA non-coding upstream 472161 44169485 ~ 44169789 (+)
G58319 NA non-coding upstream 715319 43921474 ~ 43926631 (+)
G58666 NA non-coding downstream 250074 44892845 ~ 44893078 (+)
G58660 NA non-coding downstream 275272 44918043 ~ 44921637 (+)
G58668 NA non-coding downstream 279313 44922084 ~ 44923700 (+)
G58776 NA non-coding downstream 500404 45143175 ~ 45143472 (+)
G58792 NA non-coding downstream 551752 45194523 ~ 45198264 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other upstream 38341 44584562 ~ 44603609 (+)
AMCG00009694 LOC103385381 other upstream 71419 44561777 ~ 44570531 (+)
G58522 NA other upstream 234382 44386497 ~ 44407568 (+)
G58324 NA other upstream 706188 43932952 ~ 43935762 (+)
AMCG00009647 NA other upstream 1197530 43436990 ~ 43444420 (+)
AMCG00009706 pim1 other downstream 107405 44750176 ~ 44760058 (+)
G58747 NA other downstream 413294 45056065 ~ 45057874 (+)
AMCG00009761 NA other downstream 864996 45507767 ~ 45511037 (+)
AMCG00009759 NA other downstream 917206 45559977 ~ 45572255 (+)
AMCG00009760 NA other downstream 930499 45573270 ~ 45575964 (+)

Expression


Co-expression Network