G49810


Basic Information

Item Value
gene id G49810
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3425782 ~ 3437347 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU62315
cctctgtctctgtccctctgtctctgtccctccctctgtctctgtctctccacagCCCAAGAGCCACGTCCCGGCCGCCCCCGTGCCCCTGTCCTCGGAGGAGCTCCTCTCCCAGGCGGCGCAGAAAGTGCTGCTGCTGATGGAGGAGCTGAAGGGCAAAGAACTCGGTGCCATCATGAAAGAGATGAACGAGAAGAAGTTCCTCGCCAGCATCGCACATTTTATCCCGTACTACAACATAAGGATCAAACTCCCCGAGATACAGAGCGATGACGgagaagaggaagaagtAGAAGAAGGCAGTTAGTAGCCTGGAAGATATTTGTTTTGacctgtttgaaaatgtttttctttttacagttataaaaaatgtatgatttcacatttcaatttaaagttctttgacatgttttaaggtgaaataaagtaaatgaaacaCTTAGAACCAATGGAAATCGTTTTTCAAGGCACTGGAGAAGTGAATGTTATTTCTGGTGCCCACTGTTGACCGTCACAGCCTACTAAGGTAAAGGGGGCTGGATTTAGTTGAGTTTCTACCACCGCTTGATAAGGAATGTACGAATAATGAACTCTGACCATTCTTCTCTTGTTTTTTCAGTCTGATAGGCGTGGCTCTGCTTTTTAATGCCCAGATCTGCCCCAGGACTGAAAGATGGTCAGAGTTCAGTCGCGGTCTTTAATATGCTTTAGTTGATTTGTCTGTACCTTTGTGCACCATGGTTAACGAGCTCATTATTCATTTGTGGGTCAATGACTCAGTCCAAATATTTAACAGGGATTATTATATTCTCACAACAGAGCAGCAGTAGTAAGTGTTGAGATGAATGGACAGGGCTTTAATGGATGTATGACTTACTTTCTGAACTCCATGCTGCCGTCTTCCTCTGCAAAACAGGTTGAGATGGGTCGGTGCCATCCAGGTCATCTGTGTGGGGGGTGCTTT

Function

GO:

id name namespace
GO:0009799 specification of symmetry biological_process
GO:0007507 heart development biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0048513 animal organ development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0061371 determination of heart left/right asymmetry biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62315 True 964 lncRNA 0.45 3 3425782 3437347

Neighbor

gene id symbol gene type direction distance location
AMCG00008528 NA coding downstream 55169 3356714 ~ 3370613 (-)
AMCG00008524 NA coding downstream 79009 3345535 ~ 3346773 (-)
AMCG00008522 nfix,LOC107098150,LOC106517806 coding downstream 190216 3230842 ~ 3235566 (-)
AMCG00008521 nfix,LOC106601192,LOC107757045,LOC103393624 coding downstream 252811 3148638 ~ 3172971 (-)
AMCG00008518 rnf11a,LOC103044796,LOC107757048,LOC108441179,LOC107694828,LOC107583209,LOC108259033 coding downstream 294723 3128983 ~ 3131059 (-)
AMCG00008530 NA coding upstream 65415 3502762 ~ 3504414 (-)
AMCG00008531 NA coding upstream 84122 3521469 ~ 3528475 (-)
AMCG00008532 LOC106569090,LOC105012159,LOC107599908 coding upstream 117192 3554539 ~ 3557842 (-)
AMCG00008536 NA coding upstream 163421 3600768 ~ 3611264 (-)
AMCG00008535 NA coding upstream 181302 3618649 ~ 3625092 (-)
G49806 NA non-coding downstream 33692 3390203 ~ 3392090 (-)
G49802 NA non-coding downstream 46458 3373544 ~ 3379324 (-)
G49614 NA non-coding downstream 450629 2974949 ~ 2975153 (-)
G49606 NA non-coding downstream 515154 2909662 ~ 2910628 (-)
G49547 NA non-coding downstream 601806 2823241 ~ 2823976 (-)
G49858 NA non-coding upstream 254033 3691380 ~ 3693261 (-)
G49860 NA non-coding upstream 283622 3720969 ~ 3735477 (-)
G49863 NA non-coding upstream 285882 3723229 ~ 3809262 (-)
G49871 NA non-coding upstream 342428 3779775 ~ 3781104 (-)
G49984 NA non-coding upstream 724828 4162175 ~ 4163650 (-)
G49605 NA other downstream 517117 2906675 ~ 2908665 (-)
AMCG00008491 prkcsh,LOC102779661 other downstream 723360 2636915 ~ 2702422 (-)
AMCG00008474 NA other downstream 1340757 2073783 ~ 2085025 (-)
G49375 NA other downstream 1544820 1879621 ~ 1880962 (-)
AMCG00008466 NA other downstream 1585683 1819774 ~ 1840099 (-)
AMCG00008547 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058 other upstream 332337 3769684 ~ 3777354 (-)
AMCG00008602 NA other upstream 2149728 5587075 ~ 5610329 (-)
AMCG00008609 NA other upstream 2218342 5655689 ~ 5786328 (-)
G50267 LOC107575789 other upstream 2311543 5748890 ~ 5885450 (-)
AMCG00008608 NA other upstream 2349273 5786620 ~ 5793995 (-)

Expression


Co-expression Network