G52497


Basic Information

Item Value
gene id G52497
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14982123 ~ 14982509 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU65696
CCCGCTCTTACCAGATAAAACTCCGTCAGCACCCCTCCCCTCCTGGCTGGCCCGCAGACTAGTAGCTCGGAAAAAAATTGGCCTGAGGCCAAACCTAGTTGATGAACCCTGTTGTACTGTAATATCcggtcagtgtgtctgtactgtactgcattaaCCCCTTCTtgctatatctatctatatctccCTTTCTCGTTCACTCGTTCACTAATGGAGTCAtgtttcactctctctctctctctctctcattctctccatCGATCATGGAACAACTGATACTCCCCAGGAGAGGAGAGTAAGAGAGGTCAAAACcacaaggagagagagggagaggactgACTGGAAATGATGAGATGATGAGGATGGGATGGGGGGATGAGAGcagag

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU65696 True 387 lncRNA 0.49 1 14982123 14982509

Neighbor

gene id symbol gene type direction distance location
AMCG00008928 NA coding upstream 2370 14949880 ~ 14979753 (+)
AMCG00008921 NA coding upstream 149286 14823303 ~ 14832837 (+)
AMCG00008912 NA coding upstream 332174 14632517 ~ 14649949 (+)
AMCG00008909 NA coding upstream 489544 14488533 ~ 14492579 (+)
AMCG00008905 LOC107733585,LOC107667357,LOC108433193,LOC101485512 coding upstream 504009 14467759 ~ 14478114 (+)
AMCG00008930 NA coding downstream 50225 15032734 ~ 15045423 (+)
AMCG00008932 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107674129 coding downstream 68186 15050695 ~ 15065008 (+)
AMCG00008936 NA coding downstream 115657 15098166 ~ 15099180 (+)
AMCG00008935 NA coding downstream 150827 15133336 ~ 15136021 (+)
AMCG00008941 LOC107560742,LOC106601920 coding downstream 200279 15182788 ~ 15202953 (+)
G52430 NA non-coding upstream 150646 14766211 ~ 14831477 (+)
G52439 chmp2a,bc2,LOC107727322,LOC107582752,LOC107552765,LOC106579304,LOC106589279 non-coding upstream 167709 14813495 ~ 14814414 (+)
G52384 NA non-coding upstream 361840 14619961 ~ 14620283 (+)
G52383 NA non-coding upstream 375430 14606482 ~ 14606693 (+)
G52382 NA non-coding upstream 383671 14597967 ~ 14598452 (+)
G52493 NA non-coding downstream 44209 15026718 ~ 15027582 (+)
G52580 NA non-coding downstream 142078 15124587 ~ 15125501 (+)
G52614 NA non-coding downstream 242536 15225045 ~ 15225520 (+)
G52619 NA non-coding downstream 254193 15236702 ~ 15236924 (+)
G52628 NA non-coding downstream 264389 15246898 ~ 15247191 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 170366 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 186939 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 227479 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 439875 14527818 ~ 14542248 (+)
G52349 NA other upstream 498868 14481921 ~ 14483255 (+)
AMCG00008931 pp12c,LOC106564933 other downstream 64 14982573 ~ 15020846 (+)
AMCG00008960 rps11,rs11 other downstream 873715 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 912921 15895430 ~ 15910151 (+)
G52942 NA other downstream 1379593 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 1597354 16579863 ~ 16587381 (+)

Expression


Co-expression Network