AMCG00008921


Basic Information

Item Value
gene id AMCG00008921
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14823303 ~ 14832837 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008921
ATGATCAAGCTGTTTTCACTGAAGCAGCAGAAGAAGGACGAGGAGTCAGCTGGGGGGAACCGCACCGGGGCCGGTGGCAAGAAGGCGAGCGCTGCACAGCTCCGGATACAGAAAGgtaatcattatataataatattcgGAGCAACAAGGTATACTGTACCATGCCTGCACTATAGTGTGTGCTTGGACTGTACtgagcatctctctctctcgtcttcACAGGGCTTCTATAAAGGTGGCAGGTTCGTCTTCAGTTTCAAGGTGGGGCAGGGATACCCACACGACCCCCCCAAGGTGAAGTGTGAGACAATGGTTTATCACCCCAACATCGACCTGGAGGGCAACGTCTGTCTTAACATCTTGAGggaggatTGGAAGCCTGTATTGACAATAAACTCCATCATCTATGGGCTCCAGTATCTATTCCTGGGCAAGCGATTGCAGCCGGCGCGGGCTGCCCTCATCACTGCGAACGGCAAACAGGCCACCATGGCCGGATGGGCCCGGATGCGTCTGGACATCGGGGGCCAGACCTTCCAGCACGAGATCTGGGTTGCTGCCATTCAGGAACATTTTATCCTAGGGGCCCACACCTCGTACCAGGAGGGGCACAAGCGCAGCAGGCCCAGGCCGCCCCCATGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10579 UBE2M, UBC12; ubiquitin-conjugating enzyme E2 M

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008921 True 642 mRNA 0.55 6 14823303 14832837

Neighbor

gene id symbol gene type direction distance location
AMCG00008912 NA coding upstream 173354 14632517 ~ 14649949 (+)
AMCG00008909 NA coding upstream 330724 14488533 ~ 14492579 (+)
AMCG00008905 LOC107733585,LOC107667357,LOC108433193,LOC101485512 coding upstream 345189 14467759 ~ 14478114 (+)
AMCG00008906 LOC108433193,LOC104932970 coding upstream 367503 14419818 ~ 14455800 (+)
AMCG00008908 LOC108433193 coding upstream 408568 14414349 ~ 14414735 (+)
AMCG00008928 NA coding downstream 117043 14949880 ~ 14979753 (+)
AMCG00008930 NA coding downstream 199897 15032734 ~ 15045423 (+)
AMCG00008932 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107674129 coding downstream 217858 15050695 ~ 15065008 (+)
AMCG00008936 NA coding downstream 265329 15098166 ~ 15099180 (+)
AMCG00008935 NA coding downstream 300499 15133336 ~ 15136021 (+)
G52439 chmp2a,bc2,LOC107727322,LOC107582752,LOC107552765,LOC106579304,LOC106589279 non-coding upstream 8889 14813495 ~ 14814414 (+)
G52384 NA non-coding upstream 203020 14619961 ~ 14620283 (+)
G52383 NA non-coding upstream 216610 14606482 ~ 14606693 (+)
G52382 NA non-coding upstream 224851 14597967 ~ 14598452 (+)
G52380 NA non-coding upstream 240011 14583093 ~ 14583292 (+)
G52497 NA non-coding downstream 149286 14982123 ~ 14982509 (+)
G52493 NA non-coding downstream 193881 15026718 ~ 15027582 (+)
G52580 NA non-coding downstream 291750 15124587 ~ 15125501 (+)
G52614 NA non-coding downstream 392208 15225045 ~ 15225520 (+)
G52619 NA non-coding downstream 403865 15236702 ~ 15236924 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other upstream 11546 14807297 ~ 14811757 (+)
AMCG00008920 NA other upstream 28119 14783043 ~ 14795184 (+)
AMCG00008917 smarcc2 other upstream 68659 14738449 ~ 14754644 (+)
AMCG00008910 NA other upstream 281055 14527818 ~ 14542248 (+)
G52349 NA other upstream 340048 14481921 ~ 14483255 (+)
AMCG00008931 pp12c,LOC106564933 other downstream 149736 14982573 ~ 15020846 (+)
AMCG00008960 rps11,rs11 other downstream 1023387 15856224 ~ 15863670 (+)
AMCG00008965 NA other downstream 1062593 15895430 ~ 15910151 (+)
G52942 NA other downstream 1529265 16362102 ~ 16362511 (+)
AMCG00008983 NA other downstream 1747026 16579863 ~ 16587381 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000223_00467276_00471654 UBC12, UBE2M coding CI01000223 null 466773 ~ 472398 (+)
tiger barb (Puntius tetrazona) G191505 NA non-coding NW_025048651.1 JAEQBD010000996.1 321663 ~ 350237 (+)
mexican tetra (Astyanax mexicanus) G209262 NA unknown NC_035920.1 CM008323.1 31287366 ~ 31290543 (+)