AMCG00008906 (LOC108433193,LOC104932970)


Basic Information

Item Value
gene id AMCG00008906
gene name LOC108433193,LOC104932970
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14419818 ~ 14455800 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008906
ACGCACAGCACCCCTCCGCAGGGAGATGCACACCTGCCCAGGCATGGCAATGTAGGACACCTCATCAGAGGCCCCGGAGTGGAGAGCAGTGTGTCCCAGGACTGCAGCGTCATCCCCGTCCCCCAACCCCTCGCCTCTATATTCCTTGCTCCATTTGACCAGATGGCTTTCTGTCAATGCAAGGTCCAGCTGAAGAATGTattgtgtgcagGTGTCTCCTGCAACATTAGCTCGTCCTTCGTGGATGATTGTGCAGCTGCGTCGATaaacactgccccccccccgtCAGCGTGTGGTTTGGGCTGCCTGCTGGCAGAGCAGCAGTATCTCCTGTGTGGACCTCAGTTCCGATGCTACAGGGAACTCGTGGAGAGTGGCGACATCAGCTATAAAGCGGGCCTACCCACTGACCGAGCCAAGATGCCCAAGTCCCGAGGCCACGCATGTTGCAGGACGTGGGGAGGAACTGCAGGGCGTGTCAGGGAGAGGATACCTGTCCATGCGATGCAATACCTGTCAGCACCCCTGTTAACGTTTATAGTGAtaaacaaagggaaaacaatCTTCCGCTTTAGTGCCACTCCTGCCTTGTACTTCATAAGTCCTTTTAATTTACTAAGGCGAATAGCTATTAAAATTTTGATACATTCATATCCTTTTCAAATGGTAACTTTCCTTAACTGCCTCTTCCTCACATTGTTCAGCATGATCATAATGTGTACTATTTTGACCAACTGTGTATTCATGACTTTTAGCAATCCTCCTGAGTGGTCGAAACAAGTGGAATACACCTTCACtggtatttatacatttgaatcaATTGTAAAAATCCTTGCTCGAGGATTCTGTATAGATGGGTTCACCTTCCTCAGAGACCCATGGAACTGGCTGGATTTCAGTGTATATAACAGAGTTTGTAAACCTAGGCAATGTCTCAGCTCTGCGCACATTCAGAGTGTTGAGGGCTTTGAAAACTATTTCTGTAATCCCAGATATGTGACAGAGTTTGTGGACCTTGGGAATGTATCCGCGCTGAGAACGTTCAGAGTTCTCCGAGCATTGAAAACTATCTCTGTCATTCCAGGCCTGAAGACCATTGTGGGTGCTCTGATCCAGTCGGTGAAGAAGCTGTCAGATGTGATGATCCTGACTGTGTTCTGTCTCAGTGTCTTTGCCCTCATCGGCCTGCAGCTCTTCATGGGCAACCTGCGGCAGAAATGCGTCTACTGGCCCATCAACAACACTGACACCTACCTGGTCAATGGAAGCAGGGGCTTCGACTGGAACGAGTACATCATGAATGACAGTGAGTGGATGGGGGAGATTGATGGAGACGGGCAGTCAAATTTTTACTTTGTGCCTGGACAGCTAGATGCACTGCTGTGTGGAAACAGTTCAGATTCAGGGCGCTGCCCTGAGGGATACACCTGCATGAAGGCTGGCAGGAACCCCAATTATGGTTACACCAGCTTCGACACCTTTGGCTGGGCCTTCCTCGCTCTGTTCCACTCTGAGGGCTGCAGGGAAGACCTATATGATCTTTTTCGTGCTGGTGATCTTCGTGGGCTCCTTCTACCTGGTCAACCTGATCCTAGCTGTGGTGGCAATGGCCTACGAGGAGCAGAATCAAGCCACGCTGGAGGAGGCAGAGCAGAAGGAGGCAGAGCGGCTGCCATGGCAACCTCGGCGGGCACAGTGTCTGAGGATGCGGTGGAGGACGATGGGGGGGGGCATATGTCGCGCAGCTCGTCAGAGATCTCCAAGCTCAGTTCCAAAAGTGCCAAGGAGCGGCGCAACCGGAAGAAGAAGTGGCGGCAGAAAGAGCTATCGCGAGGCGAGGAGAAGGGCGACAGCGAGAAGTTTGTCAAGTCCGAGTCTGAGGACGGCAGCCGCAGGAGGTTTCGCTTCCCTGGAGACAACCGGTTGGGAAGGAAAGCCTCGATCATGAACCAGTCCCTGCTCAGTATCCCCGGCTCGCCGTACCTCTCCCGGCACCAGAGCCGCAGCAGCATCTTCAGCTTCAAGGGCCGCTCGAAGGATGCCGGCTCGGAGAACGAGTTCGCAGATGACGAGCACAGCACGGTGGAGGACAGTGAGGACCGGCGGTGCTCCCTGTTCATCCCCCGCCGGAACAGCTACAGTGGCTTCAGCCAGGGCTCCTCCCGCATCAACCCGCTGCTGCCCCACGGCGCCAAGAGGAACAGCACCGTGGACTGCAACGGTGTGGTGACACTCATCGGTGGCCCCGGGCCCGGAGGACGGCTTCTGCCTGAGGTGATAATAGATAAGGCAGCTACTGACGACAGTCCCACCACTGAGGTGGAGGTGAAGAAGAAGCACTCAGGCTCCCTGATGGTGTCGGTGGACCAGCTAAACACTTCCTTTGGCCGCAAGGACCGTGCCAACAGTGTGATGAGCGTCATCACCAACACGCTCGTGGAGGAACTGGAGGAGTCACAGCGCAAGTGCCCACCCTGCTGGTACAAGTTTGCCAACACCTTCCTGATCTGGGAGTGCTGCCCGCTGTGGGTGAGGATCAAGGAGATCACCAACCTGATTGTGATGGATCCCTTCGTGGATCTGGCAATTACCATCTGCATTGTCCTCAACACCCTGTTCATGGCCATGGAGCATTACCCCATGACGCCCCAGTTCGAGCACGTGTTCACCGGGATCTTCACAGCTGAGATGATGGCCAAGCTCATTGCCATGGACCCCTACTACTACTTCCAGGAGGGCTGGAACATCTTTGATGGGTTCATTGTCAGCCTGAGTTTGATGGAGCTGGGGTTGGCCGACGTGGAGGGACTGTCTGTGCTGCGATCCTTCCGATTGTTGAGGGTGTTCAAGCTGGCCAAGTCGTGGCCCACACTCAACATGCTGATCAAGATCATCGGCAACTCAGTGGGCGCACTGGGGAACCTGACCCTGGTGCTGGCCATCATCGTGTTTATCTTCGCCGTGGTGGGCATGCAGCTGTTCGGCAAGAGCTACAAGGACTGTGTGTGCAAGATTGCATTGGATTGTGATCTGCCACGCTGGCACATGAATGACTTCTTCCACTCCTTCCTCATCGTGTTCCGAGTGCTGTGTGGCGAGTGGATCGAGACCATGTGGGACTGCATGGAGGTGGCGGGCCAGGCCATGTGCCTTATCGTCTTCATGATGGTCATGGTCATCGGCAACTTGGTGGTGCTGAACCTGTTCCTGGCCTTACTGCTGAGCTCATTCAGTGCGGACAACCTGGCGGCTACGGATGATGATGGTGAGATGAACAACCTGCAGATCTCTGTGATCCGCATCAAGAAGGGCATCGCCTGGGCCAAGGCCAAGCTGCGCATCTTCGCTGCCACCTACTTCAAGAAGAAGGTGACAGATGAGGTGAAGCCCCTGGACGACATGTACAACAAGGTCAACTGCATCGCCAACCACACCGGTGCCGACATCAACCGCGAGATGGACTTCCAGAAAAACGGCAATGGCACCACCAGCGGTATTGGCAGCAGTGTGGGCAAGTACATGATTGACGAAGACCGCATGTCCTTCATCCACAACCCCAACCTGACTGTGCGCGTGCCCATCGCCGTCGGGGAGTCTGACTTTGAGAACCTCAACACCGAGGACTTCAGCAGCGAGTCGGACATCGAGGGCAGCAAGGAGCTGGATGAAACCAGCTCTTCTGAAGGGAGCACCATAGACATCAAGCCAGACGTCGAGgatgtggtggtgCCACTGTGCTCCCCCACAGGCTGTATTGCGCGCTTCAAGTGCTGTGACGTCAGCATCACTGAGGGCTGGGGCAAGTATTGGTGGTTCCTGAGGAAGACCTGCTACCTGATCGTGGAGCACAACTGGTTTGAGACCTTCATCATCTTCATGATCCTGTTGAGCAGCGGTGCCCTGGCTTTTGAAGACATCTACATCGAGCAGCGGAAGACCATCCGCACCATCCTGGAGTATGCAGACAAGGTCTTCACCTACATCTTCATCCTGGAGATGCTGCTCAAGTGGGTGGCCTATGGCTTCGTCAAGTACTTCACCAATGCCTGGTGCTGGCTAGACTTCTTCATTGTGGACGTATGTACCCCCTTCTTCCTTTATTCCGTCCCTCAATAT

Function

NR:

description
PREDICTED: sodium channel protein type 8 subunit alpha-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008906 True 4116 mRNA 0.54 24 14419818 14455800

Neighbor

gene id symbol gene type direction distance location
AMCG00008908 LOC108433193 coding upstream 5083 14414349 ~ 14414735 (+)
AMCG00008902 NA coding upstream 41703 14366961 ~ 14378115 (+)
AMCG00008903 dip2b coding upstream 58380 14329331 ~ 14361438 (+)
AMCG00008901 NA coding upstream 111274 14293409 ~ 14308544 (+)
AMCG00008894 asb8,LOC107745463,LOC107563629,LOC107681993 coding upstream 138347 14279340 ~ 14281471 (+)
AMCG00008905 LOC107733585,LOC107667357,LOC108433193,LOC101485512 coding downstream 11959 14467759 ~ 14478114 (+)
AMCG00008909 NA coding downstream 32733 14488533 ~ 14492579 (+)
AMCG00008912 NA coding downstream 176717 14632517 ~ 14649949 (+)
AMCG00008921 NA coding downstream 367503 14823303 ~ 14832837 (+)
AMCG00008928 NA coding downstream 494080 14949880 ~ 14979753 (+)
G52234 NA non-coding upstream 291127 14128487 ~ 14128691 (+)
G52100 NA non-coding upstream 732038 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 942840 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 1104766 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 1107360 13311329 ~ 13312458 (+)
G52361 NA non-coding downstream 86839 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 97096 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 104919 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 106645 14562445 ~ 14562710 (+)
G52377 LOC108235766,LOC107384431,LOC106518056 non-coding downstream 120636 14576436 ~ 14576682 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 1110388 13306495 ~ 13309430 (+)
G51939 NA other upstream 1162178 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 1194872 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 1427093 12980804 ~ 12992725 (+)
G51812 NA other upstream 1493024 12925238 ~ 12926794 (+)
G52349 NA other downstream 26121 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 72018 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 282649 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 327243 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 351497 14807297 ~ 14811757 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022401 scn8aa coding NC_007134.7 CM002907.2 27251626 ~ 27345425 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_09075161_09125493 SCN8AB coding CI01000340 null 9075068 ~ 9126162 (-)