AMCG00008902


Basic Information

Item Value
gene id AMCG00008902
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14366961 ~ 14378115 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008902
aaaaagaaaaaaaccgtttttgttttttttccctcccaatGACagatatattcaaaaataataaaaacaaacaccatcTTGTGGGCCCGCTTTTAAAGACAGAAACAGTCTGCGGAGAGAGCCTTCTCCCTCCTTTCACCCTCCGAGGAAACACCGCGCTGAACACACCATCTGCGGCCGAAATCTGAAGtgATGATGGAGGAGGTGCAGCAGAGCAGCAGCAATGGCACAGAAACGCAGACGGTCACCCTGCCGACGACCATCAGTGCCTCCCAGATCTCTCAGATAGCCCAGCAGaTGTCCCTGGGCGGCTCCCCTGTGACGGTGGTGCAGCTCCCCGGGGGGCAATTCCAGGTGCAGGGGGTGATCCAGTCCGCACAGTCCTCTGTCATCCAGTCTCCACAGGTGCAGACCGTGCAGGTATGGGCTCCAGCACCCCAGTGCCGCTCTCAGGCTGGGggctCTCAGATGACGGACAGTGATGATTCCCAGGAGTCCTCGGACAGCGCCGCCTCATCCCAGAAGTCCCGGGAGGTCCTGGCCCGCCGACCCTCCTACAGGAAGATCCTGAATGAGCTGTCAGCAGAGGAGGTGGCGGCTCGCACCGAGGGTGAGGAGGACAACCCCTCCTCTTCAGCCATGACCACCATGACTGTGCCCACCCCCATCTACCAGACCAGCACCGGCCAGTACATTGCCATCGCCCCGAACGGGACCATCCAGCTGGCCAGCCCGGGTGCGGAGGGCGTGCAGGGCCTGCAGACGCTCACCATGACCAACTCGGGCGCCGCACAGCAGGGCACCACCATCCTACAGTATGCCCAGACACCCGACGGGCAGCAGATCCTGGTGCCCAGCAACCAGACGTACCAGATCCGCACCGCGCCCACCACCACGTCCCTGCCCCAGACGGTCGTCATGGCATCACCCATGGGCATCTCCTCGCAGAGCACCAAGACGGACGACCCGCAGATGAAGAGGGAGATCCGGCTAGCGAAGAATAGGGAGGCGGCCCGCGAGTGTCGCAGGAAGAAGAAGGAGTACGTGAAGTGTCTGGAGAACCGCGTGGCCGTGCTGGAGAACCAGAACAAGACGCTCATCGAGGAGCTGAAGGCACTAAAGGACCTTTACTGTGTGAAGACGGGCTAGCGCCTCAGCTGGGCATGCACTCGCCTGCTGCAGGACTCTCGGTCAGGGGAAtgggaacatttttatttcttatggtatttttttttttttttaaatgcatcatttgAATTTTAACACGTTTATGAATGAGAGAAAGCAAGAGAATCCTCACTTTTTTTGcccttttccatttttccatGCATTTATTCCTTTTAAAGAAGAGACAGTGCGGCTTAAAAGGACTTTCCTAAAATTGACTTTTTATCGTGAACGGATGAATGTGCAGACTTTTTTTGACACCCAACGTGGAATTGTGAATTTCTTACCGGACCCACCGTCGTTTCCAGCGGTTACAAATGTcacattctttcatttttaattttttatatatatatatatatatatatatatatatatatatataaaaatggtaGCAAAACCAGCTGTTTTAATCTCATCAATTGCAGCATTTTCAGTGTGTATTATATCTGAATTTGTGACCtatgtttgtctttgttgtgtttttttttttttttttttttccttcccttaaTTTTGAGGAAATGTTACAGAGCATCCTCTCCACAGTCCCTCTCTCCAACCCCTGTGACCCTGAGCACAggtaggggggtggggggacagcAGCCCCTTTCCAGCCCAGACTGATCCTGGGATGCTACCGGGGAATACAACTGCGGTTAAAAATTTTGGGGGGA

Function

GO: NA

KEGG:

id description
K09053 ATF1; activating transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008902 True 1844 mRNA 0.52 8 14366961 14378115

Neighbor

gene id symbol gene type direction distance location
AMCG00008903 dip2b coding upstream 5523 14329331 ~ 14361438 (+)
AMCG00008901 NA coding upstream 58417 14293409 ~ 14308544 (+)
AMCG00008894 asb8,LOC107745463,LOC107563629,LOC107681993 coding upstream 85490 14279340 ~ 14281471 (+)
AMCG00008897 NA coding upstream 95298 14254299 ~ 14271663 (+)
AMCG00008895 pfdn5,LOC102784983 coding upstream 113343 14250246 ~ 14253618 (+)
AMCG00008908 LOC108433193 coding downstream 36234 14414349 ~ 14414735 (+)
AMCG00008906 LOC108433193,LOC104932970 coding downstream 41703 14419818 ~ 14455800 (+)
AMCG00008905 LOC107733585,LOC107667357,LOC108433193,LOC101485512 coding downstream 89644 14467759 ~ 14478114 (+)
AMCG00008909 NA coding downstream 110418 14488533 ~ 14492579 (+)
AMCG00008912 NA coding downstream 254402 14632517 ~ 14649949 (+)
G52234 NA non-coding upstream 238270 14128487 ~ 14128691 (+)
G52100 NA non-coding upstream 679181 13686839 ~ 13687780 (+)
G52044 NA non-coding upstream 889983 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 1051909 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 1054503 13311329 ~ 13312458 (+)
G52361 NA non-coding downstream 164524 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 174781 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 182604 14560719 ~ 14561249 (+)
G52374 NA non-coding downstream 184330 14562445 ~ 14562710 (+)
G52377 LOC108235766,LOC107384431,LOC106518056 non-coding downstream 198321 14576436 ~ 14576682 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 1057531 13306495 ~ 13309430 (+)
G51939 NA other upstream 1109321 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 1142015 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 1374236 12980804 ~ 12992725 (+)
G51812 NA other upstream 1440167 12925238 ~ 12926794 (+)
G52349 NA other downstream 103806 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 149703 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 360334 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 404928 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 429182 14807297 ~ 14811757 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110528175 LOC105017014 misc NC_048571.1 CM023225.2 62325429 ~ 62342019 (+)