G55800


Basic Information

Item Value
gene id G55800
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30947366 ~ 30950209 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69754
TCAAGGTATTTCCCTTACATTTGATGGCAGAAAAATTGCTGAAGTCAAAACACTGGAGAATGATATTATCTATGCATGTTTCTTATTCAAATGAAGTTTTTGTAATTTCATCATGGCAAGAAAATGAACCAAAACCTATAGTCTGGTTGGACTTGTCAAACAAACCACCAGAATTGTGCAATGGATAATGGTGCAAATATGGAATGTCATTTTCAGTTGATGGTGGTCATGAATTTTCCAAACTCGAATTTTGTACTCGGTAGCAACAAATCAGCAAATGcacattgtttcttttcttaatttacattttaatttagtagtTGTGTCAATATTCTGTCCAGgaacacaggaaacaaaacggctttcattttccttttcctaaAATGCACAACTGCTAAAACATACCACTAATTTGGATAGTACAAATGGATAGTagacaatatattaaaaacagaaacatacagaAAAGTGAGCTTGGAAATTTACATTCAGAGAAAAATGTAAGGTGTTGAAACCCATCATGTGTGGCTTTTTGAGATGGAtgaatagttttatatatatagcattaaACCCAAAGACACTATGGATACCCCATTGTTGAATGGTTCATTCTGTTGTTCACTATGccatttctttatatatactTCACGTTATTGTTACAACTACTGTAATATAAAATTTGAACTTCTGAAATAAATAGAGAATTATGAGATAACAGATACTCCTGTACCAATAAGTTCTCTGGAGTCTGTAGTCACCAGTCTGTGAATTTGCCTTTCTTCTTAAAGTTTTGCCAAAATAATATATGGCTGAATTCTGGTGTTCCAGGCAttcctaataaaataaattatatccaGTCATTGGCctgaatctaaaaataaaaataaaaatgcatctgcTTAGAGATTTTGGTTTGGTATACCTACTCCGtgtcaaaacatatatatatatatagtttcttaGTGCGACACATTTAGTTTGATTgcagttgttaaaaaaataTATATATCCCAGAGTCGTTATTTTCTATGAGAAATATAACCCAAATTTGTATTCTATGTTTGGggttgctttaaaaataataattaaaaaaaaacattttaaagcacctAATGGAttcttctctttaaaacaatgacattaattcattaaaatgaagaataCAATCTTTCAAATATAACGATGGGAAAACAGACAGGGAAATGTCCAGATATCTCAGAGAAACTTTTTAGAATGTGTtcatataaaatcaataaaaaataaaaaagttgaaaatataGTATCTCACCCAATACAGCATTCAATTAAATCTGTTAATATGAAAGATTGAATTGGACTTTTAAACAAGTATACAACTTGGTTAAGAAAGAGGGTGAGAGTAAAGTGTGTGATCACAGTATAAAAAGTACTGAACTTGTtcacaacaataaatataagATTTAACATTGTTGCTAAACAAACTAACAACATTTAGTTTCAAGGGTCCTCTTTACATAAGCCTGGCCCCATACTGGCAGCTCCATACAATACACAGTATCATCAGGTATTCTTCAGTCCAACACAGGCAGTGGCAGTTCATTTCACTTCAACGTTTCCTCCTCCTTTTCCAGGTACTGCCCGACCTGCACAGAGCTGCCTGAGAACATGCTGGTTTCTCGTTGTATTTGCTCTCCTTTGCCTTTACAGAGTGTCTGTAAATTAGTCTCCTCGTCACACTCGACCAATGCTTCAAGCTCCACGTCAGGCATGTCAGCCTCGAATAAGGCTGGTGCGTAGTCTTCACAGCAAATGCA

Function

NR:

description
PREDICTED: methylenetetrahydrofolate reductase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69754 True 1793 lncRNA 0.33 2 30947366 30950209

Neighbor

gene id symbol gene type direction distance location
AMCG00009258 NA coding upstream 81 30944371 ~ 30947285 (+)
AMCG00009259 LOC103373082 coding upstream 11448 30928174 ~ 30935918 (+)
AMCG00009260 NA coding upstream 70334 30865491 ~ 30877032 (+)
AMCG00009264 NA coding upstream 100878 30838893 ~ 30846488 (+)
AMCG00009256 NA coding upstream 172876 30642206 ~ 30774490 (+)
AMCG00009273 NA coding downstream 180941 31131150 ~ 31136570 (+)
AMCG00009277 clstn2,LOC107561803,LOC107738117,LOC105912785,LOC107694660 coding downstream 404908 31355117 ~ 31370777 (+)
AMCG00009278 NA coding downstream 444670 31394879 ~ 31412124 (+)
AMCG00009276 NA coding downstream 469631 31419840 ~ 31424011 (+)
AMCG00009281 NA coding downstream 642839 31593048 ~ 31604365 (+)
G55745 NA non-coding upstream 345334 30599474 ~ 30602032 (+)
G55707 NA non-coding upstream 449762 30495543 ~ 30497604 (+)
G55649 NA non-coding upstream 704635 30236924 ~ 30242731 (+)
G55620 NA non-coding upstream 725239 30142212 ~ 30222127 (+)
G55597 NA non-coding upstream 948880 29998229 ~ 29998486 (+)
G55807 NA non-coding downstream 205309 31155518 ~ 31163151 (+)
G55926 NA non-coding downstream 592412 31542621 ~ 31547232 (+)
G55929 NA non-coding downstream 598322 31548531 ~ 31552162 (+)
G56021 NA non-coding downstream 1103578 32053787 ~ 32057482 (+)
G56062 NA non-coding downstream 1216656 32166865 ~ 32168048 (+)
G55591 NA other upstream 951928 29995126 ~ 29995438 (+)
G55573 NA other upstream 1035802 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 1772635 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 1839139 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 1935598 28928892 ~ 29011768 (+)
G56060 NA other downstream 1211551 32161760 ~ 32165365 (+)
G56368 NA other downstream 3050587 34000796 ~ 34031445 (+)
G56369 NA other downstream 3065461 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 3413210 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 4438705 35388914 ~ 35389327 (+)

Expression


Co-expression Network