AMCG00009345


Basic Information

Item Value
gene id AMCG00009345
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34363419 ~ 34369257 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009345
GTCTTTTGGTCCTCTTGGCATACACTACTGCAAGGGCGGAGTAACAACTGTAGTTTTTATGATTGGAAACAAAATGGCAGCACAGGATCCGCCCGCTGGACAAACGCAAGATAAGACCGAAAGCGGAAGCAAACAGACTACAAACATTGTCGCCAAACTATCCCAGTTTGCAGATGACCACATAACCATTGTCAGGAACATCAGTACAGGACTTGCAGTTGCTGGGTTAATAATACTGGCCAGGAGTATAAAACTGGTTACAAAATTTGGTGCAGCTTCAGAAATACCAGTGAAATTTATAGAAAAGAATGTTAGTCTTCGAGGAAAATTTCACCATGTCACAGAGAATGGAATAGGAGTGGAGCATATTCCAATTAGTGTTCCAGTGATATCTCGCCTGGTGAGACAAAgGCCATCAAATGCACTCCTGCTCATTCGGCTGGCTGGAGTAGAACTCACAGAGGAAGGCAAGACCTGGTTAAAACACCAGTTAGAGCCATCAGAGTTTTTGTGGTTTAAACTTATTGGAAGACAGAATGACATACTGGACTGTCTTGTCTCTGTGAACAGGGGAGGTGTATTCAGCATGTCCCTGAATGAGGAGATACTAAGACAGGGGCTGGGGAGAACTGTCCCCATCGACAGCCTGGCTCATCAGTACAGACTGCACTGGAAGGTCCACAGGAGGCTGCTTCGAGCAGAGGGGAAAGCTGAGAAGAAAGGCAAAGGCCTATGGAAGCAGCAGAATTTGCGGGAGCGCATCTcagcatatttaaatgattacaaAATGTTGAGACTTTGGAAGAAGCTATTAAAGCGAATTTGGTGACTAAGGACAACCACCTGTTCTTCATCAATAGAACAGACCCACTCCACAGACACTGTTTCCGATTCATGTCTTATTTATCTGGAAGCTAATTATATGGTAATGTATGAGCTCTACGCTctgcctttttgtttgtgtcttcaCACATTTCAATTCTTATGGATGAACAGGAGGAGCAATACTTCAGGGGTCTGACAGAATGGGTAATCAGGCTTTAATTAgtataataaagaatacatataTTCTGGGAGGAGTGAGGTTTTTGTCGTACCTTGTCTTTCTAGTGATACACACTTTAAAAAAGCTACAAATCCTTCAGCTGTGATAAATGTATAACAAGCTTGTTTTGAAGGCTCTTCTTCTAGGTTATGTCCCAGGAGATACAGCAAATACTGACCTTTAGCTCCCTCACACTATTTATATCAATACTGTAATGTAGTTTTCTTTATAGAAAGAGGAAAATGTGGTttatagtctctctctctctctgatattATAAATGCTACACAGTAATGACAATACAAAATAGGACATGTGCCTTCCACTAtatcacaatttatttatatgcaaacGTCTTTTAAGGTCTTACAGTccatcatttagttttttcgGAGGGCCCAGGATCCtaatcttttcttcttcttttctcatAAGCATTGAGTATTTTGAGTGTTGCTTTGTCACAATGATTTGCTGTGAAACTATAAGTGCCCCCACTGAGTTCAGTCACAAAAAACATGGTTTCCATGGCAGCACCAAATCCAAAAGCTTGAGGCACATCAAAAGGTGAAGCCAAGACGTTTTTTAGAGATGTCTAAGACCAAGGAAAGGATAtcgatgaaaaaataaacattatttatagaataaagtttttttttaatcattcaaaatttatgaacagaacaaattatccctgtgtctgtttgttgtccatttta
>TU70574
CACAGGATCCGCCCGCTGGACAAACGCAAGATAAGACCGAAAGCGGAAGCAAACAGACTACAAACATTGTCGCCAAACTATCCCAGTTTGCAGATGACCACATAACCATTGTCAGGAACATCAGTACAGGACTTGCAGTTGCTGGGTTAATAATACTGGCCAGGAGTATAAAACTGGTTACAAAATTTGGTGCAGCTTCAGAAATACCAGTGAAATTTATAGAAAAGAATGTTAGTCTTCGAGGAAAATTTCACCATGTCACAGAGAATGGAATAGGAGTGGAGCATATTCCAATTAGTGTTCCAGTGATATCTCGCCTGgGCCATCAAATGCACTCCTGCTCATTCGGCTGGCTGGAGTAGAACTCACAGAGGAAGGCAAGACCTGGTTAAAACACCAGTTAGAGCCATCAGAGTTTTTGTGGTTTAAACTTATTGGAAGACAGAATGACATACTGGACTGTCTTGTCTCTGTGAACAGGGGAGGTGTATTCAGCATGTCCCTGAATGAGGAGATACTAAGACAGGGGCTGGGGAGAACTGTCCCCATCGACAGCCTGGCTCATCAGTACAGACTGCACTGGAAGGTCCACAGGAGGCTGCTTCGAGCAGAGGGGAAAGCTGAGAAGAAAGGCAAAGGCCTATGGAAGCAGCAGAATTTGCGGGAGCGCATCTcagcatatttaaatgattacaaAATGTTGAGACTTTGGAAGAAGCTATTAAAGCGAATTTGGTGACTAAGGACAACCACCTGTTCTTCATCAATAGAACAGACCCACTCCACAGACACTGTTTCCGATTCATGTCTTATTTATCTGGAAGCTAATTATATGGTAATGTATGAGCTCTACGCTctgcctttttgtttgtgtcttcaCACATTTCAATTCTTATGGATGAACAGGAGGAGCAATACTTCAGGGGTCTGACAGAATGGGTAATCAGGCTTTAATTAgtataataaagaatacatataTTCTGGGAGGAGTGAGGTTTTTGTCGTACCTTGTCTTTCTAGTGATACACACTTTAAAAAAGCTACAAATCCTTCAGCTGTGATAAATGTATAACAAGCTTGTTTTGAAGGCT
>TU70575
CACAGGATCCGCCCGCTGGACAAACGCAAGATAAGACCGAAAGCGGAAGCAAACAGACTACAAACATTGTCGCCAAACTATCCCAGTTTGCAGATGACCACATAACCATTGTCAGGAACATCAGTACAGGACTTGCAGTTGCTGGGTTAATAATACTGGCCAGGAGTATAAAACTGGTTACAAAATTTGGTGCAGCTTCAGAAATACCAGTGAAATTTATAGAAAAGAATGTTAGTCTTCGAGGAAAATTTCACCATGTCACAGAGAATGGAATAGGAGTGGAGCATATTCCAATTAGTGTTCCAGTGATATCTCGCCTGgGCCATCAAATGCACTCCTGCTCATTCGGCTGGCTGGAGTAGAACTCACAGAGGAAGGCAAGACCTGGTTAAAACACCAGTTAGAGCCATCAGAGTTTTTGTGGTTTAAACTTATTGGAAGACAGAATGACATACTGGACTGTCTTGTCTCTGTGAACAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009345 True 1764 mRNA 0.40 5 34363419 34369257
TU70574 False 1091 lncRNA 0.43 5 34363499 34368674
TU70575 False 482 lncRNA 0.44 4 34363499 34366719

Neighbor

gene id symbol gene type direction distance location
AMCG00009346 NA coding upstream 983 34355739 ~ 34362436 (+)
AMCG00009343 NA coding upstream 109330 34220572 ~ 34254089 (+)
AMCG00009335 ccnl1 coding upstream 229724 34125029 ~ 34133695 (+)
AMCG00009336 NA coding upstream 241808 34119086 ~ 34121611 (+)
AMCG00009338 LOC107692013,LOC106581445 coding upstream 255405 34092726 ~ 34108014 (+)
AMCG00009349 NA coding downstream 29858 34399115 ~ 34430416 (+)
AMCG00009355 NA coding downstream 133391 34502648 ~ 34503259 (+)
AMCG00009357 NA coding downstream 268271 34637528 ~ 34677384 (+)
AMCG00009360 NA coding downstream 320501 34689758 ~ 34690484 (+)
AMCG00009361 NA coding downstream 350754 34720011 ~ 34720679 (+)
G56379 NA non-coding upstream 284580 34045490 ~ 34078839 (+)
G56376 NA non-coding upstream 321160 34038134 ~ 34042259 (+)
G56282 NA non-coding upstream 906247 33456891 ~ 33457172 (+)
G56268 NA non-coding upstream 1081655 33281537 ~ 33281764 (+)
G56262 NA non-coding upstream 1253400 33109739 ~ 33110019 (+)
G56474 NA non-coding downstream 213690 34582947 ~ 34662345 (+)
G56495 NA non-coding downstream 593497 34962754 ~ 34963224 (+)
G56501 NA non-coding downstream 650977 35020234 ~ 35067229 (+)
G56541 LOC103376870 non-coding downstream 1169630 35538887 ~ 35539807 (+)
G56542 NA non-coding downstream 1205789 35575046 ~ 35576926 (+)
G56368 NA other upstream 331974 34000796 ~ 34031445 (+)
G56369 NA other upstream 344604 34015670 ~ 34018815 (+)
G56060 NA other upstream 2198054 32161760 ~ 32165365 (+)
G55591 NA other upstream 4367981 29995126 ~ 29995438 (+)
G55573 NA other upstream 4451855 29907911 ~ 29911564 (+)
G56536 LOC100846954 other downstream 1019657 35388914 ~ 35389327 (+)
AMCG00009404 NA other downstream 2924646 37293903 ~ 37297009 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other downstream 2978851 37348108 ~ 37367671 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other downstream 3052760 37422017 ~ 37463505 (+)
AMCG00009429 NA other downstream 3161565 37530822 ~ 37605124 (+)

Expression


Co-expression Network