AMCG00009404


Basic Information

Item Value
gene id AMCG00009404
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37293903 ~ 37297009 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009404
CTTCTGGAAAAGGACTCGCTGCGAGCGGCAAGCTGGCAATTTGCTCTCCTGACATCTTCCACAGCACTACTACAGCCGAGGACCAGCACCAAAACAATGGTGGCAAAGCAGAGAATCCGCATGGCCAACGAGAAACACAGCAAGAACATCACGCAAAGGGGCAACGTGGCCAAAAGCACGAGAAACGCTCAAGATGACAAGGTCTCGGTGGGACCGTGGTTGTTGGCGCTGTTCATTTTCGTCGTGTGTGGCTCAGCAATCTTCCAGATCATCCAGAGCATCAGGATGGGAATGTAACGCAGAGTGAACAGACGTCCCCTCCTTGTCCTGTCCACCTGACATTCCACCTTCAACCTTTCCAACAGTTACACTGCGCCTGGCCTGGGAAAACACAGCGCTCGGCCGGAtctgtcatttgtttgttttcatttttttgcgAAGTTGTGTAACTTACAGGTCATTCCCTACTCGTgccttaaaatgtataaaagccATACAATTTGTAAATTTTACATTCCAATCTAGGACCTTGATCAAgtataatatactgtaaattCCGGGTTACTTTGTAATTGTTATATAACGCTTACGCTACATGCTAAATTTGTATGGCATACTTTTGTACTTGTGGACTTGTTTTCTCTCAACAAGGTTCTTTTTACAGTCTAATCATGTATAATTTCctctttattttgaaagatgGATAGTATGTggagagaaatgtttttgtttctggctACTACCTGCAACCACTGTGGCCGTGTATTGTCCATAGCATAGCTTGGCAAAGGACCCTGCGCTCATCAAAGCAGTTACCGGTTCTGACTACAGACTACAGAGGAAGGGTTGCTTGAGtctaagaaacaaaaatcataattaataaataaataaatagtgagaATTTGaggtggattaaaaaaaatatatatatatatataaaaaaaaaaaaatccaacttgACTGGGAgcaatatgtattgatttttccaTTCCTGTAGTATTTATGCATCTTAATTCTGTGATGTTGTTCTGTATATCGGGTGATTTATCAAAGAAAGCGATACGAATAAAACCTCAGAAAAGCGGTGTGTACCATCTGGGAACAAATGCTCAACTGCTGCCACTTAAAGccccacaaaacaaataaaatgtaaaagcagacCCGACTGTGTG
>TU70966
GGGAGACATTTGTGTCTACGTAGGCACTTCGCCGTGTTTATTACACCCTTCTGGAAAAGGACTCGCTGCGAGCGGCAAGCTGGCAATTTGCTCTCCTGACATCTTCCACAGCACTACTACAGCCGAGGACCAGCACCAAAACAATGGTGGCAAAGCAGAGAATCCGCATGGCCAACGAGAAACACAGCAAGAACATCACGCAAAGGGGCAACGTGGCCAAAAGCACGAGAAACGCTCAAGATGACAAGGTCTCGGTGGGACCGTGGTTGTTGGCGCTGTTCATTTTCGTCGTGTGTGGCTCAGCAATCTTCCAGATCATCCAGAGCATCAGGATGGGAATGTAACGCAGAGTGAACAGACGTCCCCTCCTTGTCCTGTCCACCTGACATTCCACCTTCAACCTTTCCAACAGTTACACTGCGCCTGGCCTGGGAAAACACAGCGCTCGGCCGGAtctgtcatttgtttgttttcatttttttgcgAAGTTGTGTAACTTACAGGTCATTCCCTACTCGTgccttaaaatgtataaaagccATACAATTTGTAAATTTTACATTCCAATCTAGGACCTTGATCAAgtataatatactgtaaattCCGGGTTACTTTGTAATTGTTATATAACGCTTACGCTACATGCTAAATTTGTATGGCATACTTTTGTACTTGTGGACTTGTTTTCTCTCAACAAGGTTCTTTTTACAGTCTAATCATGTATAATTTCctctttattttgaaagatgGATAGTATGTggagagaaatgtttttgtttctggctACTACCTGCAACCACTGTGGCCGTGTATTGTCCATAGCATAGCTTGGCAAAGGACCCTGCGCTCATCAAAGCAGTTACCGGTTCTGACTACAGACTACAGAGGAAGGGTTGCTTGAGtctaagaaacaaaaatcataattaataaataaataaatagtgagaATTTGaggtggattaaaaaaaatatatatatatatataaaaaaaaaaaaatccaacttgACTGGGAgcaatatgtattgatttttccaTTCCTGTAGTATTTATGCATCTTAATTCTGTGATGTTGTTCTGTATATCGGGTGATTTATCAAAGAAAGCGATACGAATAAAACCTCAGAAAAGCGGTGTGTACCATCTGGGAACAAATGCTCAACTGCTGCCACTTAAAGccccacaaaacaaataaaatgtaaaagcagacCCGA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009404 False 1172 mRNA 0.41 3 37293950 37297009
TU70966 True 1212 lncRNA 0.41 3 37293903 37297002

Neighbor

gene id symbol gene type direction distance location
AMCG00009398 NA coding upstream 16018 37268364 ~ 37277885 (+)
AMCG00009395 siah2,LOC105023934,LOC106567892,LOC108431284,LOC106603586,LOC107587204,LOC107732330 coding upstream 27880 37262551 ~ 37266023 (+)
AMCG00009400 NA coding upstream 32499 37253939 ~ 37261404 (+)
AMCG00009397 NA coding upstream 44209 37244233 ~ 37249694 (+)
AMCG00009403 NA coding upstream 59309 37217086 ~ 37234594 (+)
AMCG00009410 NA coding downstream 1581 37298590 ~ 37302176 (+)
AMCG00009413 NA coding downstream 108839 37405848 ~ 37410371 (+)
AMCG00009414 commd2 coding downstream 116755 37413764 ~ 37417955 (+)
AMCG00009420 NA coding downstream 180181 37477190 ~ 37492489 (+)
AMCG00009418 NA coding downstream 197991 37495000 ~ 37499186 (+)
G56775 NA non-coding upstream 2238 37285843 ~ 37291665 (+)
G56754 NA non-coding upstream 98815 37193726 ~ 37195088 (+)
G56747 NA non-coding upstream 105125 37188568 ~ 37188778 (+)
G56712 NA non-coding upstream 264361 37029206 ~ 37029542 (+)
G56694 NA non-coding upstream 318842 36900293 ~ 36975061 (+)
G56982 NA non-coding downstream 766781 38063790 ~ 38068153 (+)
G56995 NA non-coding downstream 833073 38130082 ~ 38133966 (+)
G57036 NA non-coding downstream 905785 38202794 ~ 38280479 (+)
G57161 NA non-coding downstream 1330910 38627919 ~ 38628135 (+)
G57164 NA non-coding downstream 1336088 38633097 ~ 38633351 (+)
G56536 LOC100846954 other upstream 1904576 35388914 ~ 35389327 (+)
AMCG00009345 NA other upstream 2924646 34363419 ~ 34369257 (+)
G56368 NA other upstream 3262458 34000796 ~ 34031445 (+)
G56369 NA other upstream 3275088 34015670 ~ 34018815 (+)
G56060 NA other upstream 5128538 32161760 ~ 32165365 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other downstream 51099 37348108 ~ 37367671 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other downstream 125008 37422017 ~ 37463505 (+)
AMCG00009429 NA other downstream 233813 37530822 ~ 37605124 (+)
AMCG00009428 NA other downstream 311296 37608305 ~ 37616696 (+)
G57105 NA other downstream 1145246 38442255 ~ 38457592 (+)

Expression


Co-expression Network