G56982


Basic Information

Item Value
gene id G56982
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38063790 ~ 38068153 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU71241
TGTCatcaagttttgattttattgaaCTCTAATGCCATAAGAAAGCAGCACCATGGGTTAAGTTGTGCCATCGTTTTTTCAGGTTTTACCcgattgatttttttaaataatactgcTGACACAGAGTATTTAGGACACACAGCATTAACTATGGATCTTGCCTTCAATGAAGGTGTGGAGAAACACTGAGTAGTAAAGCATTTCTAATGGCAAATTTGCAGGTAGAAGACTCATTTgtcaataaataagaaataaaactggCTAGCTTTTAATTTGACTActtgtgggattttttttttttttaataaaacaagattGGCACATTGccatttgcaaaaacaaaaagagaaaagaaaaacagatgaaaTTACCTTCCttcatcaaattaaatgaaaaacaaacagaaaaaatgaacaCTATACTACTTAACTTGTACAACTTAAACGACCAAATGTCAACTTTCAGTGCATGTGCAGAtaatataacaaacaaaatggtattgtaaaacaaaaaggtaagcTATAAGTTACCCAGCACTTACAACCCAGCAAGAGAAATGCCAAGATCGAGAGAAGACTGTCTTGCATCACTTTGCCCTCCAAAGTATCTACAGTGCTACCAGCAGAACTAGGAGGCAAAGAagtaaaagagaaagaaagaaaaagaaaagaaaattcagGAGACGGTCGGTACATTGGTAAGGAAAGTTTGAGTGAAGAACCGAGAGAGGAATCCTAATAAAGcgagagcagagagcagagagagagcagcagtaGGACTTGCATAGTAACCACAGTATTTCCAGTTTAAGTGCATAGACCGTGCGGGTagccagaaaacaaacaaaaaacctcaGAGACATGAAAATTACAGCAGAATAGGATTTGGTGTTGATAGCCAGCTATACGCTTCAGAACAATTGACAGAAGGTGTGTAAAGGATTAATTTGACACAACAGACAGCAGCCATCACTGCACAAATCGTTCCAGTTCAGAAACTGGCTTCTGTAATCAATACTATGACATTCGTATATTATTTAGTactcagaagaaaaaaaaaacagtaccaGCTAACAGAGAATACAGTTTCTACAGTGCGTTCAGTCACTAGAGCGCCAGGCGTTATCTTATCTATATATTGCACCTCACGCCTACATTGGGATTTCATGCAACGCCTCCTTTCAGACTGTGCCGTATCACAGCTGGGGAAGAAGTTTGCCAGttcccttatttttttaaataataaagctttGCATAAACCCAAAATGCGATTTACTTTCTTTATGATATGGTAAGTCAGTGTAACAAATACAACTTTAGAAAAATATCTATCAATGGTTACAACGGCATATATGGTTGGTGAATCCAGTTAGCGATGTTTCTTGATTTGTTCTAATCAAATCAGtccattttcaaaaaaataaaaaacttgatGTAGAGCCTTTTCATCGAAAGCACATCAAAGTTTGCCTGCAGCTCTGAGCACCATTAGGAATACATTCGTAGTGTGCTGGAAAAAACAagtaatatcaatttaattctGGAACCAAAAATGAAAGCCATTGGCTGCATATTTTTaagtgaataaaaatacattgtttcaacCTTATGGGACAACCTTACAGGTGACTTAGACATTACAGCTTATGTaggacatttaaacaaaaaacaaacatctgtacaGGTTTGTCTGGGGCACACAGTGCTGGAGGTTGAAAAAAGAAAGGTATCCTTGCTTGAAAGTGTGAGCATCTGCCCCTTTGATATTGCTTGCGCTGACAGATGTTCGGACATCTGTTTCCGAAAGCTCCGGCTTCAGACCTCTGAGAGCCAGTGCTGAAGACACAGGTGTCACTTCACATACCATGGGGCCAATACAGCACACCCCTCTGTCATCTCCCATACAttcatttacctttttaaatgcataacatCGGGGGATTCTAAAACGCCAACATCTTCAATAATATTCAACCTCCAAGTCATCACAGACAATGTGATGGCCGGAGCCTAACCATTTGAGCAGGACTTGCAGTCTCGGTCAATAAGGCTGTGGGAGGGGGCACAACTCCACTTCTCCAGGGTCCTTTGGTTTGTCTTTTATTTGCAGATCTTCACTACTGTATTGAACTAATCCAGGTAATAAGAACCAGATACTAAATCAGTCACTAAATGAAAAGGTACTTTTAAACCTGAAGGAAATGGTGTCTCTGAGAAACGTACTGAACTTCGTTAGTAAAAACAAACTTGATTAAGTTATTTTCTCCACCCAACTGTGAATATTAAAGcaaaatttaagaaaatgtcagtgaaaaacaaatactgatgAACTCACATGATCAGAATTGATATTACAGGCATAAAAGATGCAGCCCCTGCGAAGCCGTACAAGCTCACGACACGAAGCAACTCATCTGCATCGGTTTAGTGTGATAAGCTGGTGCATTATACACTATGAATTTGGTTTCTACAGtcatgtactgtatatagtCTAAGGAAGCCATTTTActtgtcattattattacagtgtgATGTCTCGTAGTTCGCATTGCTCGGTTTGTATCTAGAAGAACTGGACTCTCACTATCTGCACTATCACTTCCATGGATTTGTACAAAAAAATTCTGCTTAAGCGGATTTCACTAACAGTAATCATTTTTCATTGTCATCATTGGcattttgtgatgttttgaCATAAATTGAAACAATGCTTGCATTTATAAAGGAATGGGGCAGGGGTTACGGTCATATATGCGAtctctgatatatatatatatttatttttttatttttttacaaaaagaatatatttagttttagatttaaagtgcttttatgaaactaaaagaaaaagtattttaaatgatacTGCATCAAAATGTTTTGAGCTGGTTTTGTTCTATATGATAAAGAAAACCAGGCACTAAGACAGGCTTTATGAAGGATCCCATGGCATCACACCCCCTGCTCTGCAGAGCCACTGGCGAGAATGGCCTGCGACACTAATCTCTCCGATTCCAGCATGGCAGGCAACCCTGCAAGGAAGAGCAACGGCCCCAtgggacactacagcacagagtTCTGGGAGATTCATTCTCTGCAGGCGCGACAACGCGGAAAAAAATCAACCGTACCATCGACTCCCGTTTCTACAGATGCCAGACCTGTTCAGATAGTGTAAATCAGAATTCGGCTTTAGGCCGCAGATCTAGAAGTTTCGAGGTTGCGTGAAAAGTGACAGCCCTCGCGTTCTACTTTGTTCTGCCTTTTAACTTCCCCAGTTTTGTCAATGTTCAGTGGTGGTGACCAATACATCCCTCAATTCACACCTTCACGTCTGCCATTTCAAAAGGCACATTAGACAGACGCCAAACAAGATGCAACCCTTGGGCTCAACTTTTTGGTTCTGCTGCTGGAAGTGTGTTGATGCAAGAGTCTTGGTTTAggcattttcttccatttccgCTTAATCCGCCATCTCAGTAACGGGACAGTGCTTTAATAAGACAGATTTAAAGCCCAGATTTAAATACTCCATCCTTTCTGGCACCAGTCACCTCTTCTAAGGAGAGGTGTGGGCGTGGCAGCGGAGTTCCATTACATCCCGTCCCGTAGAGAGACTGTCTCATCACCCGGTCCGAATGGACCACACACTGCGCCCCAGAGTCTAAGACCCATTCTATCCTCAGATCAGGCTACTACTTATTTGCTTGCACCATTATGGATCATAATACTTTAACTCTGCGGCTGTTCATGAAAATATCAAACAGTTAACCTGCAAAATGAAGAGTCTATTTctataaaaaagataaaaggcaTAGGAAAACAAACCCGCTTGCAGCACTCTCGCACCCCCTcaccccaaaaaacaacaaaatctgaTATGTAAAATGCTGTGCTATCGTTTTCAGTAACTAAACTGCACACCTCTCTTCTCTACCTCTACCTCTGACAAATGAAGAACTCACAACGAACATTCAATGAAACCAAAGGATTTTCCTCTTGAGCCAGGCTTGATGGGAGTGATGCTGCCATCTTCTGATATCTTGCTGGATCCACGTCCTTAGTCTTCCCTTTAGCATTTGTTTAGTCTGTCTAGtggatttctttttctttttcttgtttctccCCCGACCTCCCCAGCTAGAAAAGGATGTTTCTACAGCTACAGGCCTCCCGCCTAGCTGCGTGGTATCTGGTGATAAAAGTAGATGTAGCCCAAGTCCTTAGGAGGCCTTTCCGACAGGCACACTTTATGGTCGTTGTAGATCACCCATCTGGAAAGGAAGCGAATGCCATGGATTTCAGTAAAACCGTGTCCTG

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU71241 True 4322 lncRNA 0.40 2 38063790 38068153

Neighbor

gene id symbol gene type direction distance location
AMCG00009438 NA coding upstream 4517 38031385 ~ 38059273 (+)
AMCG00009427 NA coding upstream 442400 37619502 ~ 37621390 (+)
AMCG00009419 NA coding upstream 542337 37520323 ~ 37521453 (+)
AMCG00009421 NA coding upstream 547310 37505763 ~ 37516480 (+)
AMCG00009418 NA coding upstream 564604 37495000 ~ 37499186 (+)
AMCG00009444 NA coding downstream 24247 38092400 ~ 38094123 (+)
AMCG00009443 gnb4,LOC108270972 coding downstream 57155 38125308 ~ 38129404 (+)
AMCG00009442 NA coding downstream 79822 38147975 ~ 38150946 (+)
AMCG00009449 NA coding downstream 126694 38194847 ~ 38206084 (+)
AMCG00009450 NA coding downstream 138831 38206984 ~ 38241384 (+)
G56775 NA non-coding upstream 772125 37285843 ~ 37291665 (+)
G56754 NA non-coding upstream 868702 37193726 ~ 37195088 (+)
G56747 NA non-coding upstream 875012 37188568 ~ 37188778 (+)
G56712 NA non-coding upstream 1034248 37029206 ~ 37029542 (+)
G56694 NA non-coding upstream 1088729 36900293 ~ 36975061 (+)
G56995 NA non-coding downstream 61929 38130082 ~ 38133966 (+)
G57036 NA non-coding downstream 134641 38202794 ~ 38280479 (+)
G57161 NA non-coding downstream 559766 38627919 ~ 38628135 (+)
G57164 NA non-coding downstream 564944 38633097 ~ 38633351 (+)
G57175 NA non-coding downstream 689227 38757380 ~ 38834945 (+)
AMCG00009428 NA other upstream 447094 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 458666 37530822 ~ 37605124 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other upstream 600285 37422017 ~ 37463505 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other upstream 696119 37348108 ~ 37367671 (+)
AMCG00009404 NA other upstream 766781 37293903 ~ 37297009 (+)
G57105 NA other downstream 374102 38442255 ~ 38457592 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other downstream 1366747 39434900 ~ 39437017 (+)
G57430 NA other downstream 1879853 39948006 ~ 39949200 (+)
AMCG00009516 NA other downstream 2018321 40086474 ~ 40105052 (+)
G57604 NA other downstream 2922649 40990802 ~ 40994659 (+)

Expression


Co-expression Network