G56995


Basic Information

Item Value
gene id G56995
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38130082 ~ 38133966 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU71255
CCAATACCGGAAGTGTGTCTTTGGTGATTTCTATTCAGTATTAATCGGCAGCCCCTAGCAAAATACAGAAACGAATTCCAAACGAATGACAAATCAGTGACTTTGTGAAAACGGTATTTTTACTCCCTGGATATGGTCGGTCAGCGATTTGCAGTGTTCACATTAGACGCGACGGGGACGgttctgtctgtgtttgcagtCCGATATCGCACCTTGAGTATTTACTTGAAAACAATGAAGGCGtgttattttatgaattaaCCATTTATAGACCAGTTTGTGCagactgccccccccccccccctgtacATGGTAAACAAGCCTGAAACGGGCAGTTGCTGAAAAACATTAGACGCATGTTGCGCAGAGGAGTGTCACTGTTCTGTGAACAACACGCTGCACCTAGACATTCATCTTCCAGTCTGCAGGCTCTGTGTCTCCACGTTTCTCCTTCCCATTGTGGCGTTGACCCCGACAGTGGTGGCCAGCAGCCCCCGCGCCCGGCCCGGTCTCCGCCTCCCAGCAGTGGACGCTTTGTGACTCGCCATCCTCGTCTGTTCCGAGCCCCCCCGGCCCACCCGTTTACAGAATTCAGAGCGAGGGGCAAAGACGACAGTGTGGCTGGGTTTTCAGTCAAACGTTGAGTTCTACTGTGGAAACGGCACCCCCTCCGACTCCCCCAACGCTGACATCTCGTGTCCTTTCCCCTCCGCCACCATGCTGCTGGGTAGCAGACATTCCAGCTGTAAATGCTTTCTTTCCTGATTGTCCGTGAGCGCCGTGTGCACGGTTttattcactcacacacaggcgTGTATACACGGGCGCACACGCATTTGAAGCAGTAAAGAATGACTAGCAAAGAATGCTTTGTACAGAGAACTAGAGAAATGCATGCAACAGTACTCCTAATGTAAGCACATTCAGACTTTTTActttaaaggtttttttttttattattatgatgatgatgatgatgatgggaGGCATCACTCAAGTTGTGTACCTGATACCAGTGTATTATAAAAAAGGCCTATCGCCAGTTATGCATATCGTGGGCCGTTGAAGCCGATGAGGGAGACGGCTGCTGCCCGGTGCCGTGCTCCGATCACGGGTCGGATAGCACAGGTGCTGAACCGTGAGGGCCCAACAACGCTCCCTTGCATCTCCATCCATTAGTGACCGATACGACCTCCAGTCCGAACACCGTGTGGCTCTCCCTCCTTCATTCACTCgcctcttctcttttttttttttccctctctcctctttaTAAAGTGGTCTGTATTTCACTGGATTGCGCCATAATTGccgaacccccccccccctctgcctTACTGCGGAGTAAAAGTGCCCGGGAATAGATGGCAAAGTCAGGCCGGTGCCCACTTGAAAGCGTGGCTCTTGGCGCGAGGCTGTCCCGCCGGCTGGACGAGGTGTTCGCCCTCCAGGCTGCCGCTGCCACAAGGGGAGTTACCCCGTCGTCTCGGCGCTCCCGCCCTGCAGCCAGCGCCCATGAAGTAAACCGCCTTTCTGATGTGCCAATCGACACGCCAACGAGCAGAATAGTATTTAAATAGAGCAGTGTTGAACGgaggaatgaatgaataaagtaAAGTATAGCTCTGGGACCAAATTTTAACTACAATGAAACACTAACGGAAGTATTGGTTGCAAAGCTTTTGTAGCATGTGCAAGAATAAGactgggttttttgtttttttttgttttttgatttgctttttgtttttttgccttgAAAAGGGGGTGACTGAATTGCAACAAACAACTTGAGGTTCAGGccactttttttctgtaaattattGTTGAATAGATGGATTACTTTCTACAGTTTAGTactaaaatgtttatgtatttattgattataaAGAATCCTTTTTACCAATATGTAGTGATTACGGTAGCCGTTTTCAGTTGTGCGTTTTAGCTGCATtacccctttttattttttttttaaacccctccctttcttttcctctccaaacagatttcagatatacatatattgacAATAGAATGTGGTTTTTACCAGAGAGATCCTTTAGATAACCGTGATGTAAGATGTATTGAAGTTCAGTGTTGAAAAATAATTCTTACTGTAAAAATGTGTggtcaagatttttttttttttttttttttactttgaggCTACATTTTGTGCCAAAATTACCCTCCAACATGGGAATAGATATTTTTCCCCTGTAACAGTTGCTCTGTCACTCATCCTTACTCACTCTGTGTTGTCCCGCTAACATGGAAGCGACGCTAACCCCAATGGGCAGTGCCCCTGATTGTCAATCGATTTGAACGTGGACGAGCAACTTGTTTTGCTCGTTTCCATGAGCTGCCCGACACGATACTGGTGCCTAGAAAACGAGTGCCCACTTCAGCCCAAACCGCTTGGTGCTTTCTATATACTTGTGAATACGAGTTCTGTTTCAATAATGTACACAAGtcattttgccattttattttgttgcttttttgaaATCCTGCTACCAAACCGAGCTGGATCCTGCATGTTTCACTGGAGTAGCTGTGTGTTCACTGGATATTGTCATTTTACTCCTGGTCGGtttgaactaaaaaaaaaaaaaaagaaaaaagaaaaaaaaatcgaaaaggcacatttaattaataaaaaggaagaaagaaactgaagtgttcattattttccttttaaacaaacactgcaCTGGTGTCAGTATAATCCGACGCCCTCCGTTCCCTCCCACGATATGGAGGACCAGGGAGGGCAAGATTGTGTGAAATGACTGGATCCGTCTGTAGACGCTGGCGAGATTGTCTCCCTGTGCAGCAAGCCACCGTGGTGTGCCTCGGTCCCGACCCAGGAAGGCAAAGGATGCGTTGCCTTGTTAAATAATGGCAGGCAATCACCGCAGCATTCTGGGTAAAAACAATAGGTATATAAATGCAACAGTATTAACGGTTTCCACACAACGGTATCACGCGTTGAATGTGCCTGCACACCGTACACAAGAGTTTGTGTCCAGAGCTGGGACAGAAGCCCTACAGGCCGAGAGAATATCCAAAAGTCGGTATTTTTAGCCTCTTCCCACCCCGTGACTTCACCAAGGCCCTCGGCTACCCTTCCGCGCCGTCGTTCGCAGAGGGTGACTTATTTTTGCCCACAATTCCCTTTAAATCAAGGACGTTCTTATCGACTGGATGAAAACCAATCTTGGCGGGTCTGAGTGACTAtcggtgtctctctctctcgcgcgcGCGTCGATACAGGGACCCAGTCTAGTGACCGGAAGGGCAAAGACAGCAGCCCCGAAGGCCGTCCTGTCCCGGCTCCGTGTCCCATCATTAGTGTTACATTTTCACCACGATATTGACACAGATTCAGTAAAAATGCACTGCCTTTTGGCTCTTGTATGTATTCCAACAAagtcttatttttcttaattatttttcagttcttGAGCCATTCAAAACCAGGGACTCGGTGCCATGCATTTCCTCTTACAGTGCTATTGTGTGAAGTAATTAATCACTTTGCTACAAGAACTTTTACTTCGttttttggtttccattttttttttcctcctccccccacttttttttcccccccctttCCTCCTTTGTATTTGTACAGTGGCTCGGTGATAACTGATATGTTGCCATGACTTGATATTGTAaccaataaaaaagaaaaagaaaaaaaaaaaaaaaagaaaaagcttttaacCAAGGCTGttgtgttctgtgtgttcaCTATGTTGAGAGATTGTAAGTTTATACTCTTCAGTGCAAATTTGTAGCAACAGAGCTTTTATAAGATTGTGAGTGATAGGTACACATGTAAGAATCCACATGCAAATAAACCACTAAAAACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71255 True 3885 lncRNA 0.45 1 38130082 38133966

Neighbor

gene id symbol gene type direction distance location
AMCG00009443 gnb4,LOC108270972 coding upstream 678 38125308 ~ 38129404 (+)
AMCG00009444 NA coding upstream 35959 38092400 ~ 38094123 (+)
AMCG00009438 NA coding upstream 70809 38031385 ~ 38059273 (+)
AMCG00009427 NA coding upstream 508692 37619502 ~ 37621390 (+)
AMCG00009419 NA coding upstream 608629 37520323 ~ 37521453 (+)
AMCG00009442 NA coding downstream 14009 38147975 ~ 38150946 (+)
AMCG00009449 NA coding downstream 60881 38194847 ~ 38206084 (+)
AMCG00009450 NA coding downstream 73018 38206984 ~ 38241384 (+)
AMCG00009457 NA coding downstream 200082 38334048 ~ 38354970 (+)
AMCG00009456 NA coding downstream 333301 38467267 ~ 38474039 (+)
G56982 NA non-coding upstream 61929 38063790 ~ 38068153 (+)
G56775 NA non-coding upstream 838417 37285843 ~ 37291665 (+)
G56754 NA non-coding upstream 934994 37193726 ~ 37195088 (+)
G56747 NA non-coding upstream 941304 37188568 ~ 37188778 (+)
G56712 NA non-coding upstream 1100540 37029206 ~ 37029542 (+)
G57036 NA non-coding downstream 68828 38202794 ~ 38280479 (+)
G57161 NA non-coding downstream 493953 38627919 ~ 38628135 (+)
G57164 NA non-coding downstream 499131 38633097 ~ 38633351 (+)
G57175 NA non-coding downstream 623414 38757380 ~ 38834945 (+)
G57286 NA non-coding downstream 1169371 39303337 ~ 39306230 (+)
AMCG00009428 NA other upstream 513386 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 524958 37530822 ~ 37605124 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other upstream 666577 37422017 ~ 37463505 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other upstream 762411 37348108 ~ 37367671 (+)
AMCG00009404 NA other upstream 833073 37293903 ~ 37297009 (+)
G57105 NA other downstream 308289 38442255 ~ 38457592 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other downstream 1300934 39434900 ~ 39437017 (+)
G57430 NA other downstream 1814040 39948006 ~ 39949200 (+)
AMCG00009516 NA other downstream 1952508 40086474 ~ 40105052 (+)
G57604 NA other downstream 2856836 40990802 ~ 40994659 (+)

Expression


Co-expression Network