AMCG00009405 (pfn2,LOC105899220,LOC106598797,LOC105028925)


Basic Information

Item Value
gene id AMCG00009405
gene name pfn2,LOC105899220,LOC106598797,LOC105028925
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37348108 ~ 37367671 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009405
ATGACAGGTCGCCCCATTTGCCTAATCATGGGGGTGGGCACTGGCTCTCTTTGTGGCACCGGGCTCTGGCTGAGAGCTGTCACTGCCATCCCTGGAGTGAGCAGTCAGCTCCACATTGACTATTTTATTGACAGGCAAGCGAGACGAGAGTTTGCAGCGATGGCCTGGGCCGCCACAGAAAGTGCTGAGcctgtgtattttaacaaaagaCGCAAGATGTCCTGGCAGAGCTACGTGGATAGTCTGATGGCCGATGGCAGCTGCCAGGACTCCGCCATTGTCGGCTACACGGACGCCAAATACGTGTGGGCAGCGACGGCTGGGGGCACTTTTAACAATATGACGcctcACGAAATCGATGTGTTAGTAGGAAAGGACCGGGAGGGTTTCTTCACCAGTGGTCTGACCTTAGGTCAAAAGAAGTGCTCGGTGATCAGGGACAGCCTGCAGGTGGAGGGTGACTGGACTATGGACATCAGAACAAAGAGTCAAGGAGGCGAGCCAACATACAACGTTTCTGTAGGAAGAGCCAGCAAAGCATTGGTTTTAGTCATGGGAAAGGAAGGTATCCATGGAGGTCAGCTCAACAAGAAAGCCTATTCCATGGCTGAGTACCTGAGGAAATCTGGATATTAA
>TU70945
GCCCGGTTTCCTCCGCTCGTCTTTGCTGTCCAGGCTCAGATTAAAGCGGGGACGTAACGGAGCGCGGAGCCGTGGGTGCTAGTTGGAGACACTACAACTttcctaaaaataatatagtaacACTGCATCAACCTTAACACTACCGAACCTCTGCACcatttccagattttttttttaagcagcctgtgtattttaacaaaagaCGCAAGATGTCCTGGCAGAGCTACGTGGATAGTCTGATGGCCGATGGCAGCTGCCAGGACTCCGCCATTGTCGGCTACACGGACGCCAAATACGTGTGGGCAGCGACGGCTGGGGGCACTTTTAACAATATGACGcctcACGAAATCGATGTGTTAGTAGGAAAGGACCGGGAGGGTTTCTTCACCAGTGGTCTGACCTTAGGTCAAAAGAAGTGCTCGGTGATCAGGGACAGCCTGCAGGTGGAGGGTGACTGGACTATGGACATCAGAACAAAGAGTCAAGGAGGCGAGCCAACATACAACGTTTCTGTAGGAAGAGCCAGCAAAGCATTGGTTTTAGTCATGGGAAAGGAAGGTATCCATGGAGGTCAGCTCAACAAGAAAGCCTATTCCATGGCTGAGTACCTGAGGAAATCTGGATATTAAGCAGCCAGTCCCCATTCACCTAGCAGCTCATAATCACCCTGTTGCATTGGCAGTTCAACCAGGCTGTAGTTgcttttcttcctttgttttcctccatttttattttgactttttgtACCCCCCCTTTTATTGAATAtccttgcccccccccccccttctcccttCATTTATATGCATTAACACTGTATACCCAATCCCATTCTGGCACTACTGTTGCACCATAGTTAATAATGAAGCATGTTACTACTGCGAcaaaaaaaaccacacaaaacgAGCAAACGTACAACAAGGaaaatgaaggaataaaataatggatTGATTCAATCTTTAACAGAACTGTTGGTAAAAAATGAAGGACAAGCTAAGGACTAAATTGATCATCCCTGATATTTCACACGAAGGTGCCAGTAGTGCAATCTTGGATTGATCAATGCCTTCTGAGCACTTTGAGCCAGTTAGTAAGCTCATATCGTCTTCCTTTTCTAAAGCATGTCTTGGAGGGAACACTGCatgcatatctttttttttttttttttttagctcctTTGACTTCTCTCCCACCTGCCCTGCCCTCCCCTCGCCACTCCCGCCAAAACGCCTCCTCGCCCCCGGCCCCCTCACTGTTTGTTCCTTGTAGGTGACACTCCACCAGCACCTTCGTCATACAGAGGCATGCTGTGCTCCATTATCAAACACTATACCTATCTTTTCCTTTGACCCTTGCAACTGACATCGGTTTTAGAGTTGCAGTACCTTGCGTCACATGCCTTTGCTGTTGTACTTAGACATGGTCTTACAAGTAATTGGTAGTGTTGGATTATTTTGAGTGTAATGGCAAATCTGCATTGTCAAGATGCAGGTGGAAGTTTCCTCCCATGACCTTTTCATCACATCCCTGACTGTATAATCTCCATGGACATTCCATCATTACAATAGCTCGGGCACTTAAGTTTTGTTTGCCAGCTcctgtaatatatatacttttttttttttttttaaaggctgccATTTTGGACAGTAGATATCCCAACATAACCATCTGGAGTTTGTCcagtttcaatttttttcataGGACCAATATTAGTCGCAGCTTGGGATTTTACAAAATTGCTCTAAAGCATTGTAAAGGATGACTGCTAGCTTCAACTCTACACTGAATGCAAAACACTAACTTTTAATACTCGCTCCCGGTGATGGTGATTCTGTACCAGGGTACAGTACCAGTACCAGGGTTGGAAATGGCAGTCTCCTCATTTGACAACTGTTTTgttgcaatgttttttaaaatgaattattgcaTTTGACCCTGTAAATCCATGCTgtggggaaaaaggaaaaaaaaaacacaaaaaaacaacaaaactgtggaataAATTGCCTTGTGCTCTAGCTATCATCTTAAGATGTGGTATCAGAAACTGTCTGTCAAAGCACGGTACTAAATGTTATGtccaatttaaaaagtttaaaaaattaaataaaaaataaaaaaacacaaaaaaacaaacaaaaaaaaaaaagaccctgAAAAGTAACtctgtaaacacaaaataaatgggaGATGGTATTGGTTGGAATAAGAAAACTTGGTTGTCTTGTGGAAAACTTAATACAAAATCTATGTATCCTGTGCCATAATGTAAGAGATGATCTGTTGCTATTGTGAGATGGATGATGTTGGCTGCCCAGAAAGGAGTAATTTGAATGGCACTTCCTTAGGGATATTTTAGTGCAAACTCAAAATGTTCAGGCCTTGTGGAATTTGTACAGATTAAACAAACCTTGTTGCTGATTTTTATGTTCATTTCTTTCCctgcacttttttctttcttgcatctGGGATACAGTCTAACTCATCTGatttaatatgcattaaaaaaaaaaatgccataaaTTGATAAACCACCTTGTTTACAGACAGATCAATAAATTTATTCCAACCAGATCAAT

Function

symbol description
pfn2 Enables ATP hydrolysis activity; actin monomer binding activity; and phosphatidylinositol-4,5-bisphosphate binding activity. Involved in several processes, including negative regulation of ruffle assembly; positive regulation of ATPase activity; and regulation of actin filament organization. Located in extracellular exosome.

NR:

description
PREDICTED: profilin-2-like isoform X1

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009405 False 636 mRNA 0.53 5 37348108 37365721
TU70945 True 2579 TUCP 0.41 3 37360101 37367671

Neighbor

gene id symbol gene type direction distance location
AMCG00009410 NA coding upstream 45932 37298590 ~ 37302176 (+)
AMCG00009398 NA coding upstream 70223 37268364 ~ 37277885 (+)
AMCG00009395 siah2,LOC105023934,LOC106567892,LOC108431284,LOC106603586,LOC107587204,LOC107732330 coding upstream 82085 37262551 ~ 37266023 (+)
AMCG00009400 NA coding upstream 86704 37253939 ~ 37261404 (+)
AMCG00009397 NA coding upstream 98414 37244233 ~ 37249694 (+)
AMCG00009413 NA coding downstream 38177 37405848 ~ 37410371 (+)
AMCG00009414 commd2 coding downstream 46093 37413764 ~ 37417955 (+)
AMCG00009420 NA coding downstream 109519 37477190 ~ 37492489 (+)
AMCG00009418 NA coding downstream 127329 37495000 ~ 37499186 (+)
AMCG00009421 NA coding downstream 138092 37505763 ~ 37516480 (+)
G56775 NA non-coding upstream 56443 37285843 ~ 37291665 (+)
G56754 NA non-coding upstream 153020 37193726 ~ 37195088 (+)
G56747 NA non-coding upstream 159330 37188568 ~ 37188778 (+)
G56712 NA non-coding upstream 318566 37029206 ~ 37029542 (+)
G56694 NA non-coding upstream 373047 36900293 ~ 36975061 (+)
G56982 NA non-coding downstream 696119 38063790 ~ 38068153 (+)
G56995 NA non-coding downstream 762411 38130082 ~ 38133966 (+)
G57036 NA non-coding downstream 835123 38202794 ~ 38280479 (+)
G57161 NA non-coding downstream 1260248 38627919 ~ 38628135 (+)
G57164 NA non-coding downstream 1265426 38633097 ~ 38633351 (+)
AMCG00009404 NA other upstream 51099 37293903 ~ 37297009 (+)
G56536 LOC100846954 other upstream 1958781 35388914 ~ 35389327 (+)
AMCG00009345 NA other upstream 2978851 34363419 ~ 34369257 (+)
G56368 NA other upstream 3316663 34000796 ~ 34031445 (+)
G56369 NA other upstream 3329293 34015670 ~ 34018815 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other downstream 54346 37422017 ~ 37463505 (+)
AMCG00009429 NA other downstream 163151 37530822 ~ 37605124 (+)
AMCG00009428 NA other downstream 240634 37608305 ~ 37616696 (+)
G57105 NA other downstream 1074584 38442255 ~ 38457592 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other downstream 2067229 39434900 ~ 39437017 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G87216 NA non-coding CI01000015 null 1368214 ~ 1375675 (+)