AMCG00009415 (wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084)


Basic Information

Item Value
gene id AMCG00009415
gene name wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37422017 ~ 37463505 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009415
ATGAGTAACAACCCGCTTCAGCCTTTACCCAGGCAGCCGGTGATCCACGTCGCCCAGGACCTGGACACGGACCTGGAGGCTCTGTTCAACTCGGTGATGAACCCCAAGCCCAGCTCCTGGAGGAAGAAGCTCCTTCCCGAGTCTTTCTTCAAGGAGCCGGACTCGGGCTCGCACTCCCGGCAGTCCAGCACCGACTCCGGGAGCCACCCGCCCCGACTGACAGTTCAGCACGTCCGCTCGCATTCCTCCCCGGCCTCGCTGCAGCTGGGGACGGGGGCCGGCGCGACCCCCAGCCCGGCGCACCACGCTCACCTCCGGCAGCAGTCCTTCGATGTGGCCGACGAGCTGCCCCTGCCGCCGGGGTGGGAGATGTCCTTCACCTCCACCGGTCAGAGGTACTTCTTAAACGTGGTGCGCTCTccggggtggggtggggtgggctGGGCTGTAGGGGCAGGGGGCTGGCTAGAGTACCGTGAGGACATCCTGACGGGGCCTTCATCCGAGACGAGCTGGGAAACATTTCTGGTCgagaagggaggagaggagaaggggaCTCATGTGGAGAAGGTAACCACGTGGCAGGACCCCAGGAAGACCATGACGACGGCAATGAATCAGATGAGCCTCCACACCCCGACCACCTCCACCCCAGTGCGCTCAGTGGCCTTGTCTCAGCCCAACCTTGtgaTGGCacaccaccaccagcagcacCCACAGCACCCCCAGCATCCACAACAGCAGCAAGCCCAAGCCCCACAGATGATCTCCAACCCCCCAGTTTCCCAGCAGAGCCTCCAGCAGCAGAGTACCCAGCCTGGGCTGATGAACCTGCCCAACCCCCTGACCacccagcagcagcaacagcagaaGATGAGGCTGCAGAGGATCCAGCTGGAGAGGGAACGCATCCGGATGAGACAGGAGGAGCTTATGAGACAGACAGCTTCCCATGGAGTCGGACAGCATGGCTCCAGTGCCGATGGCCACCAACCCCGCGCCAAACATGAATCAGGACATGAGGACCCTGCCAGCCAGTACCTCCGACCCCTTCCTCAACAGGCAAGCACCTTCTATTCTCATGGGCCCTACCACTCCAGAGAGCAGAGCACTGACAGCGGCCTGGGGCTGGGCTGCTGCAGCATGCCCACAACCCCCGAGGACTTCCTCAGCAACGTCGACGAGATGGACACAGGAGAAGCCATGGCCCAGAACTCGATGGCCATCAACCCACAGAGTCGCTTCCCTGACTTCCTGGACTCCCTGCCAGGCACCAGCGTGGACTTGGGCACACTGGAGGGTGCCGACCTCATTCCCATCCTCAACGACGTGGAGTCCGTGCTCAACAAGAGCGAGCCCTTCCTCACCTGGCTCTAG
>TU71031
AGTGGGCCCTACCACTCCAGAGAGCAGAGCACTGACAGCGGCCTGGGGCTGGGCTGCTGCAGCATGCCCACAACCCCCGAGGACTTCCTCAGCAACGTCGACGAGATGGACACAGGAGAAGCCATGGCCCAGAACTCGATGGCCATCAACCCACAGAGTCGCTTCCCTGACTTCCTGGACTCCCTGCCAGGCACCAGCGTGGACTTGGGCACACTGGAGGGTGCCGACCTCATTCCCATCCTCAACGACGTGGAGTCCGTGCTCAACAAGAGCGAGCCCTTCCTCACCTGGCTCTAGGGGGATGCAGgaagagagaggtggagagagagagagagagagagaaagagagagactgcgCCCACTTCTTCTGGGCTGCCATGGACAGGGTCATGCCACCGCTACCCAGCCGCTGTCCTCACAAGCAGACGTGTGCTTTCTTCTTTCCATCATCTTCCCTTTCAGTGACTATTTGTCTGCCGCCCCTCAAACACGATTCCCTAAGGATCTTTCCTTCCATTAACCTGCCCAAGGTTGAATACGTGTCACTATTTAATccgtttattttattattgtacccCTCCCGCCCTCTGCAACGCATGACGCCTTAACCAAAGTTAAAGCCTGGTTGGATGAATTGCtacaaaaaactgaagaaaaaaacaggagcAAAGTATGCACTTAGCACTTGCCCAACAAATcgcaaatttaaattaaattagtgacattgtttttaagttttttaacTCCTGCTGTCTTTCTACAAGCTTTATGCCGATTTTAAACTGCCTGAGAGTGAGAGCCGCAGAGTCGCTGTAGTGATGTGAGAGAGAGCATTTTGCTGTTGtgaagagagagtgagggagagagagagagagagagagagactcataGGGGCCTTTGAACCATGTGCATCCCTCAGTGTGctgcctgtttttttctttgctttgtgtgATGCAATTTCCACAATGCTAAAAAGGGGAGGCTTTAGTGCCATCCAGTGGACATATACGGTGCCCGCTGGTAACGTACAGTTCTGGCAGGTGTGCCGATGCCAGGCGACCAGAGGATTCCCTGGATGTGTCTGGGAAAACTCCAGGATGGAAAATTCTCCCTCGACTGTGTCTTCACCCAAGAAACCGCATGAGCCCTCgcagcaattacatttttacaaaaatctccaaataccaaatacatttttttgtatgatgTGCATCATgattaaagctttaaaatgtgtttttgtattattaccatttaaactgtgtgtatacaggttttttttttttatgatgttttGTTGGCATTTGAACAAATTGTATTCTAGCATTTATTTGAACTGATGTATGTTTGTACACATGCATCCTTTCCTAGGTAGCTTTTAGAAAACTAATTACTAGCACATTTCTGTGTTGTAATATGTCCCTTTTTTATATAACACTAcagtattctttttttatatactgtaaaatagTCCAGATCAGTTCTTATAAAATCTGGTGCCATTTTAGAGTTTTAatagtttgcattttaatatttatcaagagctatgttttttttttttgttttttgttttttttatgaatttgatACCTTGAAGCACTACAAGTTGACTATGGAATTAAAGGTTTCCCGATATGAAATTAATGTGTTTCAGAGGATAACTTTTAGTGACACAAAAAGCTCCCACTTTGTAAATATTAACTGTTAAGCTAATCATTTCCTCTTGTATTataatcaattgttttttttttgtttttttaaccgaTCTTCTAATCCTTATATACTTGCAAAGTGgggtaaacatttaaaatccaaaGGGCAACGCTTCCAGAATATTTGTACTGCAGGGAATAAACAATAGACTTTTGTATCACTTGGGTTTTCTGCctaaaatgtacagaacattATCAAGATATTCAAGTGGAAGAACATGGGTCGAGAAgttcatatttttgttctgcatgtccatttgcaatatgttttttccatagtttttattttttattttatttgtaattattattgcaTGTAAATTTACTCACTTGATATTCCTAGTTTAGGTGGTTTATAATCCTACTATTTATCATGACTATACTGTGTTCTGTTATTCCGTAGATATTTAGGACTGAGAAGGCAACAAGATTAAGGGATTTTAGAAAAGCAAGCAAACtaggaaaatgaacaaaaataaaaactctgaaaACTGCTCATGACGTCCTAAAGCCAATGttcaaaagtttttattttacttgcggggggaggggggggaggctTTGTTATACTGAAGAATAGACTTCCTTCCTGTGAACTGTTTTATATGATAGAGGGATCAGTCTGCCAGCTTTCCATGTGTGAGAGGAGACAGTCTAAACAATGGCAGTGTCTCCAGCTTCCAGTCGGGTATCAGAACTGCTTGGACTCGGATCAGTTCAGGTGCAGGAAAGCAGGCGGGGGGGGCTCTGAGGTGACAGTgatccaaattattattaaaaaaagattttaaaaaagccTGTAGAGAAAACAAGTTTGCATTTTCACCAGTAAAAACGTTGAATCAGTAGATGAAGTCTGTAGTTGAAGTTGCTGTTCTTGGTGGTGGTTTCGTTGTCGTTGTGGTTGTACTTGTTGCTTTCCACTTTTATTCCATTAAGTGAAAGAAAAGAATAGAAGCAGAACACATGACCGTGGAAAGTATGGTGTTcaccaattattttttgttgttgattttaaaataaaatctccaaAGTCTCTTTATAATGGGTGGGACGCTTATGGCCAGCTACCTATGTGTATTATAGAGAGGCTGATGTAAAAATGCTGTGCCCCAGAACACAAATGTGTAGGTTATAGGATAGCAGACAGGAATTCAGAAGTGCAGTTCAATGGGAAGTCCTCCGTGTGTGCCTGGCAGTGGCCGGGTCCGGGTTCGGGTTATGTGAATGGTGTCGGCATGCTGGTGAATTCTGCAAAATCACTAAAAGGCTTGTGTTGGATCTCTTGGCAGGATGGAGTCCACTTATAAGAATGTAGACtccaagaaaatgaaaatgaaaaaaatctgaaaatacaaatgaataaaataatgctcttgtaactttgttttaaagaaaaacaatctaataaaaaacTTTTCAGCATCCTTGTA

Function

symbol description
wwtr1 Predicted to enable transcription coactivator activity and transcription corepressor activity. Involved in regulation of gene expression. Acts upstream of with a positive effect on BMP signaling pathway. Acts upstream of or within several processes, including animal organ development; epithelial cell differentiation; and negative regulation of retinoic acid receptor signaling pathway. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; digestive system; endocrine system; head; and mesoderm. Orthologous to human WWTR1 (WW domain containing transcription regulator 1).

NR:

description
PREDICTED: WW domain-containing transcription regulator protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009415 False 1377 mRNA 0.63 8 37422017 37460657
TU71031 True 3145 lncRNA 0.40 2 37460042 37463505

Neighbor

gene id symbol gene type direction distance location
AMCG00009414 commd2 coding upstream 4062 37413764 ~ 37417955 (+)
AMCG00009413 NA coding upstream 11646 37405848 ~ 37410371 (+)
AMCG00009410 NA coding upstream 119841 37298590 ~ 37302176 (+)
AMCG00009398 NA coding upstream 144132 37268364 ~ 37277885 (+)
AMCG00009395 siah2,LOC105023934,LOC106567892,LOC108431284,LOC106603586,LOC107587204,LOC107732330 coding upstream 155994 37262551 ~ 37266023 (+)
AMCG00009420 NA coding downstream 13685 37477190 ~ 37492489 (+)
AMCG00009418 NA coding downstream 31495 37495000 ~ 37499186 (+)
AMCG00009421 NA coding downstream 42258 37505763 ~ 37516480 (+)
AMCG00009419 NA coding downstream 56818 37520323 ~ 37521453 (+)
AMCG00009427 NA coding downstream 155997 37619502 ~ 37621390 (+)
G56775 NA non-coding upstream 130352 37285843 ~ 37291665 (+)
G56754 NA non-coding upstream 226929 37193726 ~ 37195088 (+)
G56747 NA non-coding upstream 233239 37188568 ~ 37188778 (+)
G56712 NA non-coding upstream 392475 37029206 ~ 37029542 (+)
G56694 NA non-coding upstream 446956 36900293 ~ 36975061 (+)
G56982 NA non-coding downstream 600285 38063790 ~ 38068153 (+)
G56995 NA non-coding downstream 666577 38130082 ~ 38133966 (+)
G57036 NA non-coding downstream 739289 38202794 ~ 38280479 (+)
G57161 NA non-coding downstream 1164414 38627919 ~ 38628135 (+)
G57164 NA non-coding downstream 1169592 38633097 ~ 38633351 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other upstream 54346 37348108 ~ 37367671 (+)
AMCG00009404 NA other upstream 125008 37293903 ~ 37297009 (+)
G56536 LOC100846954 other upstream 2032690 35388914 ~ 35389327 (+)
AMCG00009345 NA other upstream 3052760 34363419 ~ 34369257 (+)
G56368 NA other upstream 3390572 34000796 ~ 34031445 (+)
AMCG00009429 NA other downstream 67317 37530822 ~ 37605124 (+)
AMCG00009428 NA other downstream 144800 37608305 ~ 37616696 (+)
G57105 NA other downstream 978750 38442255 ~ 38457592 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other downstream 1971395 39434900 ~ 39437017 (+)
G57430 NA other downstream 2484501 39948006 ~ 39949200 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020614 wwtr1 coding NC_007133.7 CM002906.2 38049130 ~ 38114599 (+)