G56376


Basic Information

Item Value
gene id G56376
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34038134 ~ 34042259 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU70463
ACTTTATTAGATTAAGTTAACAAGTACTTTAATAACAACTGCAACTTTGGGGTTTGAATGCAAGACAGTTCGCAGAAAACAATCATGACCCAAGGGTTACAACATTACACCTACAAAATAACTCCCTCCCAAAGTATACATCGATTTTGATTCCTGGTCTTTTAAAGTACAATATGCAGTAGCTCAGGTACGTAAACATTATCCAACCCTTCTTTTTCAAGTTGCAGAGCAcgaacaaaaatacaacacaccGATGATAGCGACTGCAAGAAAATGCCAAGCACAAGatggagcagacacaaacatatTGGTCTCTTGGTACAGGGCCTGATGCAGGAGGTCAATAGTCTGACATTTATACCAGTGGTGTGAATATTATGTTGGAATATTGGGCACTTTCTGGGGCATGTTCACTTAAACCTGGCAGTGAACGATTAGTTTTATTAACTGCATTTAATGAGAATCAAGAaagtaaagacaaaaacaagaaaggcGCAAAAAGGTGGATCTCTCTCATCCAATGGATTGAACTCTGGGGGAATGAGGAAAGGGGAGCTGGGAGGTTAAGACTGAAAAGCTACATGAATTACAACAGGGAGAAAAAgctatttattaaattgtaacTAAATAGCTTTAcgttaacagaaataaataactcatattactacagtatatattaaatatattaaaccatTTCACATTTCCATGATCTGTTAGTGTATGGCACATTTGAGATTAATATCTTCTGATTCACTTGCAAAAGACATGAGTGATGTAAACTGGAGTTAAGGcatcaaataaatgtaaggGGCGGAGAAAAAGGAagactgatttcacattaaagTCTTGGAGTGGCAAATATCACACAGAACTACCGGGTTCTACAAATGGGAGTGCAATTTGCATCACATTAACTTCATGGCAATGACTGGAAGTGAGGTAGTAAACTCTGTGGATATTAACATATtgaataatgcagaaaaaataataaggcaCAATGACAatgtatcttggaaaacaaattcactagtgaattaaaactaaaattaaaattccatTTGTAAACAGCCTACAAATGgcagcaacaaaaaaaaccaTGTTGAAATGATTCAATAGGTATTaagacacaataaaaacatgaacattagATTAATCTTATTTCAGATTATTGTTCTCTGACATGTACAGGGTCACATGTAGTCGTTAAACATGACACTCAATATCAGTCCATGATTGTTAAGTTTTCAAGTGCAAAGGTTTTTCTGTCATTACATTGGCAAAACCGACcatataaaaatactgtaaaaaacattaaagtatgCAGTTTCATACAAAATGCACTGGTACCAAAGCAGCAATTTTAATGTTACTAGTATATTTATGTGTGCTTACCAAAACTAGAACAAACAACAGTATGGTCATATGAAATCAGCTGGTTTAGCAGGAATGTTAGATGATAAacagagttttatttttctataaataatAGATGTTTTAGAAAGACACAAATATGATCTAATCTGACCATGAGAAGCAGAAGATGAAGTTAGGTTGCAGCTGCAATCCTGGTAGTTTGACATAGAAAATATCTCTGACAGGGGCAATGGGACATTGCATCATGAAATGAACTTACTACAAAGCTGCCGATTGGCCCCTCACCCTGCCTCTGTTAATCTACACAGCACACAAGATTCACTTCCTCTCTTGCTACAGCTCGATGGGCCTGTGGAGTTACCTagtgtaatggggctcattcAGCATAATGAGCATGTTACAAGTGATGTAACCCGACAGTGAAATCAATACAGTAGAATACACTACTGGGTGGAATTGCTGCGGTGCGGAGCGCTCAGAGGGGCGTCCGTGGTGTGCGGTTTGGATCCCGAGCAGGGAGCACCGACTGCACCGGCTACACTCGCAAAGTCAGgagttattttctctttcagataaaCAAGGTTGCAATAGCAACCTAACTTTCTTTCAAGTCAAAAATAGTTGCCAAAGGGACAATGGGATACCATGTTCCGAAGCAATAGCTTCAATCAGAGCTGAGGCCTTAAAGTGGCTCCAGCAGTTCAAAAGAACCAAACACAGGTGCTCCCATGCAATGTGCCACCAGCCTGTCACAGAACTGCCTGCACTTCCTTGACTTAACACAAGGGAGGTGATGGAAACAATAGAAACTACAGATTCACTGTAGAGCGATGCCAGGCAAGGAGACCTGCTGTGTGGCTAATCTCGAACATTTAGCATTGGGATCGCTAAGGCCTGCTGGAGTAACAGTACTCTCTAgtgttgaaagaaaaataccCTGAAACAAAAGGGAGATTTCAATGATAACAATGGTAACAGAAAACTAAACTAACAGATTAAGCTGCAGAATTGCAGCCACAAAAGGcagcaaaaatacatattataatttaaataatgactaAGAATGATCAAATGCCTTGATATGGGCAGTTTTCAGCTTTCCGATTCAATGGACAAGGCGAAACAGGGCCTAAAGAAAGAAGAATAGAATAGAAAACATGTCCTCTCAGAGCTTCTCCCCAAATTGTGCAAGTGAAAACAGAAAGTGCAGCTGACCAGAGGCAGCGGGAAGGTTCATCTGTGACGCATCTTCCAAGGGTCTACTGGCTGCTTTATGATCAGTTTTCAGCACTTCCTGTTCCGTGATGCAATGTCCCATAGCCCCTTTAggagctattttttttttaatttaaagagaactaaaactatatatatatataaaacctataTCATTTAGTACCGTATACGTACATACTTATGCGTGACAAAGTTTCACGaacctttctatttttaatctttttgcaagtaaaaacatttaaaagtccAAACTTGAAAACATAAATTTATACATGGTAGACAGTTACTTGTAACTAGTGTTTATAGTTCAGGTTTATTCTTGAAATTATTCAGAATCGACGTGATTAATAATAGTCACTTTCTATCTGCTACCAGTACCAGACTACCAGTAATCTGCAGAAAACTTGGCTTTCTTGTGTACACTGAAGTAGCCAATAGCGTAGAAAGTGCACCAAATATAACCAGTTATATTCAGTGGCACTTATAAATTGTTATGCAAGTATTTGCTTTTGCGAGGACTGTAGTCATTTGGCGATTTCCACAGCAATTATTACCAATGAAAATATTTACGTATAcggtataataaatacatgtgtttgaATTCGAATTTTAAATCAAGTATTTGAAGTAAGCTTTACTTAAACAGTCAGattaacaaattcaaattgtTTCTTTCCTTAAATAAAGAATGTTTAACACCGGAAAATGACTTAAATAACACAACCTCCCTTGaaagtatacatttacatttagtatCCTAAGCTTGGaacttcaaaacattaaaaccatAGATCATACATGCTTCATCTTCAAAGGTCTTCATCCTCACACAGCAAAGGTTCCACTTCTGGAATTTTCTTCAGGGCCAGTAGGTTCAATTCAGTGCATCTGTGTTTTCGATACAAGATGAACTGGGCTGAGATCTATAGTCATTCTTGTGAAGGAAATGAATATGCTGTTTTCTTGGGGTCTGTCTTCCTGAGACCTACAATGCTACTGCAAAAAATTAAATGGTTACATGATGTGTAGTACTAATATTACTATTTTCAACGACAAACTTTTTCACAGAAGTCTGCCCACGACCTAATTTCCCAATACACTGTACAGGAGCCCATTGTCAATGTCATCCGAGACGCTGAAAAGCTTTATAAAAACTTCAGCTGAAACTCTTGCACTATCCTACATGGTTTCACAGGAAAGGTTACATTATTCAAAAGTGTATGGTTTAACCAAGTGAATCATTTCAAGTAAAAGGATACAAAGAAATCAAGGAATAGCACTCCAAGGCTTCCGATGAGCCAGGCCAGGTGGTTGAGGATGAAGACGCTCTTTGAACTCTTCAAAGCTGGCAGGATCACAATAAGGCTTAACCCATACGTTCCATTGCCCAGCATAGCCAGTGCAAACAGCAAGTATGAAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70463 True 4032 lncRNA 0.38 2 34038134 34042259

Neighbor

gene id symbol gene type direction distance location
AMCG00009330 NA coding upstream 32487 34001523 ~ 34005647 (+)
AMCG00009329 NA coding upstream 37061 33991608 ~ 34001073 (+)
AMCG00009324 NA coding upstream 460535 33534374 ~ 33577599 (+)
AMCG00009323 slitrk3,LOC107570382,LOC107705787,LOC107600237 coding upstream 517149 33515937 ~ 33520985 (+)
AMCG00009320 NA coding upstream 586864 33437686 ~ 33451270 (+)
AMCG00009334 veph1,LOC106581439 coding downstream 21305 34063564 ~ 34068571 (+)
AMCG00009337 NA coding downstream 38235 34080494 ~ 34090966 (+)
AMCG00009338 LOC107692013,LOC106581445 coding downstream 50467 34092726 ~ 34108014 (+)
AMCG00009336 NA coding downstream 76827 34119086 ~ 34121611 (+)
AMCG00009335 ccnl1 coding downstream 82770 34125029 ~ 34133695 (+)
G56282 NA non-coding upstream 580962 33456891 ~ 33457172 (+)
G56268 NA non-coding upstream 756370 33281537 ~ 33281764 (+)
G56262 NA non-coding upstream 928115 33109739 ~ 33110019 (+)
G56261 NA non-coding upstream 931513 33106370 ~ 33106621 (+)
G56211 ppm1l,LOC108430727,LOC105935930 non-coding upstream 1087168 32948137 ~ 32950966 (+)
G56379 NA non-coding downstream 3231 34045490 ~ 34078839 (+)
G56474 NA non-coding downstream 540688 34582947 ~ 34662345 (+)
G56495 NA non-coding downstream 920495 34962754 ~ 34963224 (+)
G56501 NA non-coding downstream 977975 35020234 ~ 35067229 (+)
G56541 LOC103376870 non-coding downstream 1496628 35538887 ~ 35539807 (+)
G56368 NA other upstream 6689 34000796 ~ 34031445 (+)
G56369 NA other upstream 19319 34015670 ~ 34018815 (+)
G56060 NA other upstream 1872769 32161760 ~ 32165365 (+)
G55591 NA other upstream 4042696 29995126 ~ 29995438 (+)
G55573 NA other upstream 4126570 29907911 ~ 29911564 (+)
AMCG00009345 NA other downstream 321160 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 1346655 35388914 ~ 35389327 (+)
AMCG00009404 NA other downstream 3251644 37293903 ~ 37297009 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other downstream 3305849 37348108 ~ 37367671 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other downstream 3379758 37422017 ~ 37463505 (+)

Expression


Co-expression Network