G80566


Basic Information

Item Value
gene id G80566
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 29292499 ~ 29297070 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU100491
aagactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagtccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatatTactgaatgtgattttattgcattataatgaaatcatgtttttcaaaatataaaaaagaacacaagatacaaataacaaataaaaagaaaagaaaatcctacACATTACTATTTAAAGTGTGCTTCATCTGTTATAAATaatgcttcagtgctcttggtaTTGCTTTTCAACAATGCCTCCAATTATTTGGTGGATAAGTAATTATAGACCAATGTGAACACAAAGTTAGCTAAGTTTAGAAGCAGTTTGCATGATTATTTCTCTGTGCTATCACATCAATGAATGTATGTCAATTCAGGGACAACAAGAAAATCTAATGCAGTTCTGATATTGTTGAAACAATGGTCCCAACAGAATCAGGAACATCAAGCAAACTTATAACTTGACGTGCGTACATTTCTGATTAATATGAGACCATATCGATAAATTAGAGAAAAAGTGGATTTAATGGCAAATCAATCTTAAATGTTTGTGCTATTAAAAGTGTGGATGTATTCCTAttccttaaaaaatatgtatttcgaGTTTTTCCTTTCAACCTTACTATATTACACTGCTTGAAAATAcgtaacattttacataatttcattattataacatCAATACTGTAGTACTGGAGGGGAAGCTTAGCTCACGTCACAAACCTCTGTCTTCCACTCACTTGCCAAGCATCCTACAGTTCTGTCAAAATGCACAACATTTTGTGGTTGAAACTTGATTCTTCATTCAACTTTATTgaaaagaggacaaaactgggCACTATTTTTTCAGAgctattaaagaaaatacactgATGTATAATGACTAAATTCTATGCATATTTTTTGGAGTTTTGGAGACGGTGTTTCAACCTTTTCAACAAAGCTGGATGTGTATTAGGGGCTCTGTGTACTCTGAAAGGATACATCGTTAGTAATCACGAGGTACTGAatgatataattaaaaagaactTAAAGAAATTACAACAATACTACCACTTCTGTATTTGCTtagaacataaaatatatatggaagAATTCAGTGAGTAATTTCCTTAAACTTCTGTTTGTTTCCCTTTATGAATACAATTCTCAACTGttggaaaacaacacattaaagcACAGAAACTTAATTTACAAGTTTGTGAGTGTTCTTTCTACAATTTTCAATTACCGTAAAGTATGCGGTTAATGATACTGTGGAATAAAAGGCATCCAGAATTCAGTGGTCAACAGCTTATGATAGCTGACCTCTTTCGAACATCACGTGAACatatacttcaaaataaatacacaaaagagATGTTTCATTCATAcagaaaattacataaaactGATTGAAGGGATCTATGAAATCTTTTCAAGGTGCAATAGTTTAGAACACACTAATTTTGTGCACTAGCAGCACATTGGTTTATTATCAGTCTGCTACCATTGTATGGCAAAGCTACTCCTTTTTTGCTTCTATTTGTATATTCTACCAGAGTAAAACAATTGTATACATGACATAACAAAAAACGTCCTGTACAAGTAAACTTCCTGCAGTTATCCATGGC

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100491 True 1865 lncRNA 0.34 2 29292499 29297070

Neighbor

gene id symbol gene type direction distance location
AMCG00010430 NA coding downstream 92669 29199267 ~ 29199830 (-)
AMCG00010419 NA coding downstream 116610 29174549 ~ 29175889 (-)
AMCG00010418 NA coding downstream 121903 29113454 ~ 29170596 (-)
AMCG00010417 NA coding downstream 280991 29000499 ~ 29011508 (-)
AMCG00010416 psat1,LOC107548526,LOC102798431,LOC107556046 coding downstream 293782 28993936 ~ 28998717 (-)
AMCG00010427 NA coding upstream 25264 29322334 ~ 29345146 (-)
AMCG00010429 pcsk5,LOC106580081 coding upstream 53624 29350694 ~ 29393886 (-)
AMCG00010426 pcsk5 coding upstream 112102 29409172 ~ 29415995 (-)
AMCG00010428 pcsk5 coding upstream 135727 29432797 ~ 29438596 (-)
AMCG00010436 LOC107557575 coding upstream 187011 29484081 ~ 29494432 (-)
G80538 NA non-coding downstream 222001 29068455 ~ 29070498 (-)
G80517 NA non-coding downstream 226648 29064495 ~ 29065851 (-)
G80516 NA non-coding downstream 233447 29058798 ~ 29059052 (-)
G80515 NA non-coding downstream 238704 29053340 ~ 29053795 (-)
G80514 NA non-coding downstream 239395 29052835 ~ 29053104 (-)
G80592 NA non-coding upstream 17888 29314958 ~ 29315859 (-)
G80608 NA non-coding upstream 209084 29506154 ~ 29506560 (-)
G80609 NA non-coding upstream 213850 29510920 ~ 29513414 (-)
G80709 NA non-coding upstream 702759 29999829 ~ 30021876 (-)
G80725 NA non-coding upstream 806339 30103409 ~ 30103647 (-)
AMCG00010371 NA other downstream 2865841 26412210 ~ 26426658 (-)
AMCG00010364 inip,LOC107658659,LOC107558675,LOC107571239 other downstream 2912752 26367932 ~ 26379747 (-)
AMCG00010343 hook3 other downstream 3736419 25516064 ~ 25556080 (-)
G79601 NA other downstream 5927552 23359643 ~ 23364947 (-)
AMCG00010288 NA other downstream 6206154 23082655 ~ 23086345 (-)
AMCG00010442 LOC107672760,LOC107738293,LOC107592320 other upstream 655620 29952690 ~ 29961324 (-)
AMCG00010458 LOC107396140 other upstream 1213900 30510970 ~ 30520381 (-)
AMCG00010478 znf367,LOC107568105,LOC107704585 other upstream 1775382 31072452 ~ 31080322 (-)
AMCG00010487 ppip5k2 other upstream 2657300 31954370 ~ 31997694 (-)
AMCG00010509 fem1c,LOC106580179 other upstream 3696217 32993287 ~ 32999999 (-)

Expression


Co-expression Network