AMCG00010364 (inip,LOC107658659,LOC107558675,LOC107571239)


Basic Information

Item Value
gene id AMCG00010364
gene name inip,LOC107658659,LOC107558675,LOC107571239
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 26367932 ~ 26379747 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010364
ATGACTTTAGGTTTTCAGAATAAGAACAGAGTTGCTATTCTTGCAGAGCTGGACAAGGAAAAGAGAAGACTGATACAGAACCAGTCAATGAATAACCCTGGAGCCAGTATTCCTCTGTCGAGACCTGCCCTGACCAAGGATTTCAGAGACCATGCTGAGCAGCAGCACATTGCAGCCCAGCAGAAAGCTGCTCTACAGCACGCACACGCTCACTCGTCGGGCTTCTTCATAACCCAGGATTCTTCCTTTGGAAACCTCATCCTTCCTGTCCTCCCTCGACTAGACCCAGAATAACACCACATGAACAATTCACTGCACAAGGACATATAGTGGAGCTGTGAACTGAAGAGGACTATATTCctgaatatattttgaactttttttttaagccttttttgttgctttgtatATATGAGTATTTTAGgagtttcaaaacaaatgtttctcaCCCTCTGCTTATGACACTATCTTCTGTAAATGGCAATTGTTTGGGATTTTCACTGAAACTGCCAGATGTGTCAACAATATACATTCAACTGTGGATTAGCTTTTCAGTTGtgatttctatttaatttttttatttgaatcaatatccctgtatttatgtttgtttagttgatgttttatttttggttgatcattttttaaataaaattaatttgcataatctgtatatatgtatttttgtttacatcTCTGCCATTActtggaaaaactaaaaatgtaagtACAATCTGTAAATTAAGATGTCTGTATCAGATGGAGTGTTTTGGGTTAAGGCTTTTAATATAGAGCAATCCATCAGTCTAGTTAGAAATCACACCACTGCCTAGTGGTTTAAGTAATCAGGAGTTAACCCTGTCTTCAGAGACAGGTAGATGCTGAGAGCTTCATTACCAGACTGTGTTGTTCACAATAGAACCTCACCTTTTACTATAAAG
>TU99963
ATCAGAGAGCGTCCACAGAACGAGCAAGAACCGCTGAAAAGGCTTCTGCTTTTGACTTTTTACAAATGGCATCAAATCCACCCGGACAGGGTTTTCAGAATAAGAACAGAGTTGCTATTCTTGCAGAGCTGGACAAGGAAAAGAGAAGACTGATACAGAACCAGTCAATGAATAACCCTGGAGCCAGACCTGCCCTGACCAAGGATTTCAGAGACCATGCTGAGCAGCAGCACATTGCAGCCCAGCAGAAAGCTGCTCTACAGCACGCACACGCTCACTCGTCGGGCTTCTTCATAACCCAGGATTCTTCCTTTGGAAACCTCATCCTTCCTGTCCTCCCTCGACTAGACCCAGAATAACACCACATGAACAATTCACTGCACAAGGACATATAGTGGAGCTGTGAACTGAAGAGGACTATATTCctgaatatattttgaactttttttttaagccttttttgttgctttgtatATATGAGTATTTTAGgagtttcaaaacaaatgtttctcaCCCTCTGCTTATGACACTATCTTCTGTAAATGGCAATTGTTTGGGATTTTCACTGAAACTGCCAGATGTGTCAACAATATACATTCAACTGTGGATTAGCTTTTCAGTTGtgatttctatttaatttttttatttgaatcaatatccctgtatttatgtttgtttagttgatgttttatttttggttgatcattttttaaataaaattaatttgcataatctgtatatatgtatttttgtttacatcTCTGCCATTActtggaaaaactaaaaatgtaagtACAATCTGTAAATTAAGATGTCTGTATCAGATGGAGTGTTTTGGGTTAAGGCTTTTAATATAGAGCAATCCATCAGTCTAGTTAGAAATCACACCACTGCCTAGTGGTTTAAGTAATCAGGAGTTAACCCTGTCTTCAGAGACAGGTAGATGCTGAGAGCTTCATTACCAGACTGTGTTGTTCACAATAGAACCTCACCTTTTACTATAAAGGGCACCATCTAATAAGTAGATATCATAGGTTTGAAACACCTACACATCCATGCTGCATTAAAACTGGCATTGCCTAACATGGCAGAACATGGCGTTGATGCTTTTGAATGTGGTGTTGTCTCACCAACATgacaatttattataataaccTCAAATTAGCCTGATTTCccctgtaattaatttagtataAAGGAGGGAGTTTGCCCAAAGAACAAATCAGCACCAGATAGCCCTGGTTCACCATGACAATCTGTTTGAAGCTTTCTACCATAACATTTctctggacaagggcgtctgctaataaataaataaataaaataataataataataataataataataaaagtggtGAAACAATTTACCTGCCCCTTGTTCCCAACAGTAAATGTGCTCTTTATTTTTCATCcccttttgtagtttttaaacATGGAACCAAGCATGACTTTCCCAGTCTCAAATTACAGACCACTTTTCTTAATCTCAGTCCAATATATGAAACAATTAGTTCAGCCTCAATTCCCCTCTGAGCTTTAAACTCTTAAGGGCTAACAatccttttttaatgattttggtTTTATGGGGTGACATTAGTCTTGTTTTCAATCCCattgttttctcatttacatTGTGGTC
>TU99964
ATCAGAGAGCGTCCACAGAACGAGCAAGAACCGCTGAAAAGGCTTCTGCTTTTGACTTTTTACAAATGGCATCAAATCCACCCGGACAGGGTTTTCAGAATAAGAACAGAGTTGCTATTCTTGCAGAGCTGGACAAGGAAAAGAGAAGACTGATACAGAACCAGTCAATGAATAACCCTGGAGCCAGACCTGCCCTGACCAAGGATTTCAGAGACCATGCTGAGCAGCAGCACATTGCAGCCCAGCAGAAAGCTGCTCTACAGCACGCACACGCTCACTCGTCGGGCTTCTTCATAACCCAGGATTCTTCCTTTGGAAACCTCATCCTTCCTGTCCTCCCTCGACTAGACCCAGAATAACACCACATGAACAATTCACTGCACAAGGACATATAGTGGAGCTGTGAACTGAAGAGGACTATATTCctgaatatattttgaactttttttttaagccttttttgttgctttgtatATATGAGTATTTTAGgagtttcaaaacaaatgtttctcaCCCTCTGCTTATGACACTATCTTCTGTAAATGGCAATTGTTTGGGATTTTCACTGAAACTGCCAGATGTGTCAACAATATACATTCAACTGTGGATTAGCTTTTCAGTTGtgatttctatttaatttttttatttgaatcaatatccctgtatttatgtttgtttagttgatgttttatttttggttgatcattttttaaataaaattaatttgcataatctgtatatatgtatttttgtttacatcTCTGCCATTActtggaaaaactaaaaatGTCTGTATCCCATTCACTGAGCTCAGCCAATCACAATGCCAGGAACTGCTGTATAAGTACCTTTactcagagacagagacagtgactGAAGAGaacacaaagagagaaaaacaccaGATGTGGTTGAAAGATGAAAACTTTCTTAGCAGTGACTGTACTACTTCTCTTTTCTGCTGCAGTAGATCCAGCTGACAGTCTCAAGCATGATATGAAATCAAGGATAAGGAAAGcatttttttcaaagaaatcAATGCCGGTGACAATCAATGAGGAcaacaaatacaACTGCGTGGTTGAGAAGTGTTTCCCTGATCTGACACAATGTAATGCAAATCCAAGAGTCACAGTTAGACACCGCCTCTCAGatggAGAGCAGAGGGAGGTGTTCCAAATCCTCTGTGTAATTGAATTTGCTGTCTGTGCAACCAACTGTTTTAACAGAGTCCTACACAATGTTAGTCTTGC

Function

symbol description
inip Predicted to be involved in DNA repair and response to ionizing radiation. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of SOSS complex. Predicted to be active in nucleoplasm. Orthologous to human INIP (INTS3 and NABP interacting protein).

NR:

description
SOSS complex subunit C

GO:

id name namespace
GO:0010212 response to ionizing radiation biological_process
GO:0006281 DNA repair biological_process
GO:0070876 SOSS complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010364 False 941 mRNA 0.37 3 26373377 26375156
TU99963 True 1641 TUCP 0.37 5 26372742 26379747
TU99964 False 1253 lncRNA 0.40 10 26367932 26379747

Neighbor

gene id symbol gene type direction distance location
AMCG00010363 ptbp3,LOC107658670,LOC107744247 coding downstream 120424 26225287 ~ 26247508 (-)
AMCG00010352 NA coding downstream 148119 26204482 ~ 26219813 (-)
AMCG00010351 NA coding downstream 165082 26197041 ~ 26202850 (-)
AMCG00010350 NA coding downstream 249772 26081980 ~ 26118160 (-)
AMCG00010349 NA coding downstream 427817 25914914 ~ 25940115 (-)
AMCG00010370 NA coding upstream 49160 26428907 ~ 26444908 (-)
AMCG00010373 NA coding upstream 126534 26506281 ~ 26527369 (-)
AMCG00010375 grin3a,LOC107653477,LOC107750958,LOC107702562,LOC107710005,LOC107554227 coding upstream 380375 26760122 ~ 26778863 (-)
AMCG00010376 NA coding upstream 480805 26860552 ~ 26861050 (-)
AMCG00010387 musk coding upstream 1353396 27733143 ~ 27753037 (-)
G80112 hsdl2 non-coding downstream 53681 26308543 ~ 26314251 (-)
G80104 ugcg,LOC106572764,LOC106568572 non-coding downstream 206674 26160330 ~ 26161258 (-)
G80103 NA non-coding downstream 209144 26158226 ~ 26158788 (-)
G80102 NA non-coding downstream 209777 26157596 ~ 26158155 (-)
G80100 NA non-coding downstream 238704 26128966 ~ 26129228 (-)
G80147 NA non-coding upstream 17054 26396801 ~ 26397078 (-)
G80148 NA non-coding upstream 17992 26397739 ~ 26398358 (-)
G80150 NA non-coding upstream 30238 26409985 ~ 26411452 (-)
G80181 NA non-coding upstream 246285 26626032 ~ 26626332 (-)
G80182 NA non-coding upstream 250018 26629765 ~ 26630005 (-)
AMCG00010343 hook3 other downstream 811852 25516064 ~ 25556080 (-)
G79601 NA other downstream 3002985 23359643 ~ 23364947 (-)
AMCG00010288 NA other downstream 3281587 23082655 ~ 23086345 (-)
AMCG00010271 NA other downstream 4385882 21964529 ~ 21982050 (-)
AMCG00010262 shc3 other downstream 4795420 21541019 ~ 21572512 (-)
AMCG00010371 NA other upstream 32463 26412210 ~ 26426658 (-)
AMCG00010442 LOC107672760,LOC107738293,LOC107592320 other upstream 3572943 29952690 ~ 29961324 (-)
AMCG00010458 LOC107396140 other upstream 4131223 30510970 ~ 30520381 (-)
AMCG00010478 znf367,LOC107568105,LOC107704585 other upstream 4692705 31072452 ~ 31080322 (-)
AMCG00010487 ppip5k2 other upstream 5574623 31954370 ~ 31997694 (-)

Expression


Co-expression Network