G80102


Basic Information

Item Value
gene id G80102
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 26157596 ~ 26158155 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU99899
CACGAATGCCACTGTCACAAATCCACACCAGGTCGTACTTGGCGACTTCATATCCTGGCAtcagattgtttattttagggTTGATGCCGACCTTTTTACCACCTATAACAGAAAAGCACTTGTCATCGTTCCCATCTGAGGCAGATCAATGGAATATCATCGATGGCAAGGCCTTCTTCCTGCAGATGAGAGCCGGGACCCAGCTGGTGGCATTGATACTAGAATCAATGGCTTTTTAGTAGAAACACTGCACTCACATTAGGCCTCAGAAAACACTGCCATTACAAGGGAGTTTCTGAGCAGGAGCAGAGCAGGGTGTAATTATTCAGttctttaaatgcatattgATTTTCAATACTGTGCAGAatgaggggaggggggtttcACCATCATCATGAACACCGGAAGGTCATGTTCTTCGGATTCTACATTTACAAAGGCTCACAAACACAGTGGAAAATGCCCAATGAATcagtattttatacatatacatgtttcGCCATGAGCAgggtatttgattttcattttgttaacaCCCAATCGTTTACATATGGGCAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99899 True 560 lncRNA 0.43 1 26157596 26158155

Neighbor

gene id symbol gene type direction distance location
AMCG00010350 NA coding downstream 39436 26081980 ~ 26118160 (-)
AMCG00010349 NA coding downstream 217481 25914914 ~ 25940115 (-)
AMCG00010348 NA coding downstream 246425 25891998 ~ 25911171 (-)
AMCG00010342 NA coding downstream 945097 25201333 ~ 25212499 (-)
AMCG00010341 NA coding downstream 991620 25158070 ~ 25165976 (-)
AMCG00010351 NA coding upstream 38886 26197041 ~ 26202850 (-)
AMCG00010352 NA coding upstream 46327 26204482 ~ 26219813 (-)
AMCG00010363 ptbp3,LOC107658670,LOC107744247 coding upstream 67132 26225287 ~ 26247508 (-)
AMCG00010370 NA coding upstream 270752 26428907 ~ 26444908 (-)
AMCG00010373 NA coding upstream 348126 26506281 ~ 26527369 (-)
G80100 NA non-coding downstream 28368 26128966 ~ 26129228 (-)
G80090 NA non-coding downstream 30291 26127056 ~ 26127305 (-)
G80095 NA non-coding downstream 77083 26078800 ~ 26080513 (-)
G80094 NA non-coding downstream 87971 26069303 ~ 26069625 (-)
G80080 LOC108430444 non-coding downstream 135638 26018963 ~ 26021958 (-)
G80103 NA non-coding upstream 71 26158226 ~ 26158788 (-)
G80104 ugcg,LOC106572764,LOC106568572 non-coding upstream 2175 26160330 ~ 26161258 (-)
G80112 hsdl2 non-coding upstream 150388 26308543 ~ 26314251 (-)
G80147 NA non-coding upstream 238646 26396801 ~ 26397078 (-)
G80148 NA non-coding upstream 239584 26397739 ~ 26398358 (-)
AMCG00010343 hook3 other downstream 601516 25516064 ~ 25556080 (-)
G79601 NA other downstream 2792649 23359643 ~ 23364947 (-)
AMCG00010288 NA other downstream 3071251 23082655 ~ 23086345 (-)
AMCG00010271 NA other downstream 4175546 21964529 ~ 21982050 (-)
AMCG00010262 shc3 other downstream 4585084 21541019 ~ 21572512 (-)
AMCG00010364 inip,LOC107658659,LOC107558675,LOC107571239 other upstream 209777 26367932 ~ 26379747 (-)
AMCG00010371 NA other upstream 254055 26412210 ~ 26426658 (-)
AMCG00010442 LOC107672760,LOC107738293,LOC107592320 other upstream 3794535 29952690 ~ 29961324 (-)
AMCG00010458 LOC107396140 other upstream 4352815 30510970 ~ 30520381 (-)
AMCG00010478 znf367,LOC107568105,LOC107704585 other upstream 4914297 31072452 ~ 31080322 (-)

Expression


Co-expression Network