G80112 (hsdl2)


Basic Information

Item Value
gene id G80112
gene name hsdl2
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 26308543 ~ 26314251 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU99924
AGGATGTGCATTATTGCCTTTGCTAGCATTCATCTaccagtctttaaaaaaaaaataaaaaaaattcaaagaTGTATGCCAAGacatttctgtttcattcaCTACAAGGTAATACGGGTGATACAGCACTTACTAACCTGTGTGGTTCTTAAACCAAATAGGGTTGAGATTCAGAGGAGGGCTGAGATTTAGGATGTGGGGGTTTTTACTCTTTCGAAGGTGAGGGATGCAGAGCTTAGACGTCAGATAAGTTCCCCTTAGGTTGATACCAATCATAAGGTCCACTTTCTTCATGGAGGTCTCCAGAGTTCCAGTTAAATTGATGGCACTGGCATTATTTACCAAAATGTCAATTCCTCCAAATTTCTGCACAGCTTGTTCCACTGCATCACCAATCTGCTTCTCATCCCTCACATCCACAACACAAGGCAAGGCTTTCCCCCCAGCAGCCTCAAttTCTTCTGCAGCAGTGTAGATTGTCCCTGGCAGTTTGGGATGAGCTTGCGCCGTTTTGGC

Function

symbol description
hsdl2 Predicted to enable oxidoreductase activity. Predicted to be located in peroxisome. Predicted to be active in mitochondrion. Orthologous to human HSDL2 (hydroxysteroid dehydrogenase like 2).

NR:

description
hydroxysteroid dehydrogenase-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99924 True 516 lncRNA 0.43 4 26308543 26314251

Neighbor

gene id symbol gene type direction distance location
AMCG00010363 ptbp3,LOC107658670,LOC107744247 coding downstream 61035 26225287 ~ 26247508 (-)
AMCG00010352 NA coding downstream 88730 26204482 ~ 26219813 (-)
AMCG00010351 NA coding downstream 105693 26197041 ~ 26202850 (-)
AMCG00010350 NA coding downstream 190383 26081980 ~ 26118160 (-)
AMCG00010349 NA coding downstream 368428 25914914 ~ 25940115 (-)
AMCG00010370 NA coding upstream 114656 26428907 ~ 26444908 (-)
AMCG00010373 NA coding upstream 192030 26506281 ~ 26527369 (-)
AMCG00010375 grin3a,LOC107653477,LOC107750958,LOC107702562,LOC107710005,LOC107554227 coding upstream 445871 26760122 ~ 26778863 (-)
AMCG00010376 NA coding upstream 546301 26860552 ~ 26861050 (-)
AMCG00010387 musk coding upstream 1418892 27733143 ~ 27753037 (-)
G80104 ugcg,LOC106572764,LOC106568572 non-coding downstream 147285 26160330 ~ 26161258 (-)
G80103 NA non-coding downstream 149755 26158226 ~ 26158788 (-)
G80102 NA non-coding downstream 150388 26157596 ~ 26158155 (-)
G80100 NA non-coding downstream 179315 26128966 ~ 26129228 (-)
G80090 NA non-coding downstream 181238 26127056 ~ 26127305 (-)
G80147 NA non-coding upstream 82550 26396801 ~ 26397078 (-)
G80148 NA non-coding upstream 83488 26397739 ~ 26398358 (-)
G80150 NA non-coding upstream 95734 26409985 ~ 26411452 (-)
G80181 NA non-coding upstream 311781 26626032 ~ 26626332 (-)
G80182 NA non-coding upstream 315514 26629765 ~ 26630005 (-)
AMCG00010343 hook3 other downstream 752463 25516064 ~ 25556080 (-)
G79601 NA other downstream 2943596 23359643 ~ 23364947 (-)
AMCG00010288 NA other downstream 3222198 23082655 ~ 23086345 (-)
AMCG00010271 NA other downstream 4326493 21964529 ~ 21982050 (-)
AMCG00010262 shc3 other downstream 4736031 21541019 ~ 21572512 (-)
AMCG00010364 inip,LOC107658659,LOC107558675,LOC107571239 other upstream 53681 26367932 ~ 26379747 (-)
AMCG00010371 NA other upstream 97959 26412210 ~ 26426658 (-)
AMCG00010442 LOC107672760,LOC107738293,LOC107592320 other upstream 3638439 29952690 ~ 29961324 (-)
AMCG00010458 LOC107396140 other upstream 4196719 30510970 ~ 30520381 (-)
AMCG00010478 znf367,LOC107568105,LOC107704585 other upstream 4758201 31072452 ~ 31080322 (-)

Expression


Co-expression Network