G80150


Basic Information

Item Value
gene id G80150
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 26409985 ~ 26411452 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU99971
AAAActatcaaaacaacaacaccgaTTTTCAAGCTATTTCTCAAACTAGCAGTATTAAcactaataaaatgtacattatattaatttgatagtaaacaatgcacaatgaaatggacaaagcacaaaaaaggaatgcaacagaaaaataacatcaGTTTTGGCTTTTAGAGTTaatcatttgtataaatataaaataaactcccCATGTGTAACATGCTGGTGTGAGTAAAAATGAACTCCAATACAATTCCAAGTTAACTGTTCTGAGGACATCTGACCTGTGTATTGAACATTGCGTAAGATACAACCCATTGGATTTTCTTGAGAGTAACACACaagatagaaagaaaatattagtttaaaaaacagaaaacaagtgcAAAAGCCAGTTTCCGcaggtgtatttaattgaaagaatAAAGAGAAAAGCATTTTTCCAGTAATCATTAAAAAAGCGGAAACCAAGCTTACCATTTTGGCAGGGTTTTGCCGAGGACAATTAGAATGTcttcattaaataatttctCCATTTAAGAGACTAACCTGTTAAAATTGAGTTTTATATTCCACTGAGTGTCCTGGTTATTAAGGAAACAGatacaaatcaaaaatacacTGTGTGGCAGAACTGTTAGGATATTAGTGGTCTATAGCACACAGTATTGTATTCAATTAATAGGACTATTAATTATTAAGATATTATTTCTGAGTTATGACCAGAGAGCTTTTGTCCGGCAGATagattttaaagaaagcaaGTTCAGGATTTTCATGGTTTTTGGATCTTTATCATTTATACATGGATcgttacaaaatatttacatatacttCTTCCTATTGGAACTTAATGTAGTTCATCAGCAGAATGTCAAAATATCAAAAAATGATAGGAATGTAAAACCCTTCTTTATTTGGGATAAACGCGtaggagaggggaaaaaagagtgGGGGTGGGGACATTTCTGTAGCTGCCTGAATGACATCCAGTAATGACATTAAAGCAATCTAAAACTGCACTGTTTTTCATGGCATTTAGTCAAGAAAGGAATTGCACAAAACAGAATGCAGCATAATTCTATACTGGCAATTGATTCTCCCTTGAAATTTGCATATGATATCCATTGTGAATAGTactaaaaacattgttattagCCTTCTACATGTACAAAACTAGATTAAGTCAAATAttctataatttattataaaacttgtaaataataattagattagattaatAATTGAGTTGCATTCATTATGATTACCCCTATAAAGAACAAATacctacatgtttttttttttgtttgtttgtttttgcatatatatcttgttttaattctgaaagTGATCAAATGATTCTAGCTGGCTGACCAGATCTGACCCTTCAGGAAGTACAGTGGACTTCTGTGAGGCAGACCAGGTGTGTTCCCTTGATTTCAGGTAAGCACAAAGTAAATGCCAGGGTCACCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99971 True 1468 lncRNA 0.32 1 26409985 26411452

Neighbor

gene id symbol gene type direction distance location
AMCG00010363 ptbp3,LOC107658670,LOC107744247 coding downstream 162477 26225287 ~ 26247508 (-)
AMCG00010352 NA coding downstream 190172 26204482 ~ 26219813 (-)
AMCG00010351 NA coding downstream 207135 26197041 ~ 26202850 (-)
AMCG00010350 NA coding downstream 291825 26081980 ~ 26118160 (-)
AMCG00010349 NA coding downstream 469870 25914914 ~ 25940115 (-)
AMCG00010370 NA coding upstream 17455 26428907 ~ 26444908 (-)
AMCG00010373 NA coding upstream 94829 26506281 ~ 26527369 (-)
AMCG00010375 grin3a,LOC107653477,LOC107750958,LOC107702562,LOC107710005,LOC107554227 coding upstream 348670 26760122 ~ 26778863 (-)
AMCG00010376 NA coding upstream 449100 26860552 ~ 26861050 (-)
AMCG00010387 musk coding upstream 1321691 27733143 ~ 27753037 (-)
G80148 NA non-coding downstream 11627 26397739 ~ 26398358 (-)
G80147 NA non-coding downstream 12907 26396801 ~ 26397078 (-)
G80112 hsdl2 non-coding downstream 95734 26308543 ~ 26314251 (-)
G80104 ugcg,LOC106572764,LOC106568572 non-coding downstream 248727 26160330 ~ 26161258 (-)
G80103 NA non-coding downstream 251197 26158226 ~ 26158788 (-)
G80181 NA non-coding upstream 214580 26626032 ~ 26626332 (-)
G80182 NA non-coding upstream 218313 26629765 ~ 26630005 (-)
G80183 NA non-coding upstream 220327 26631779 ~ 26632088 (-)
G80185 NA non-coding upstream 224530 26635982 ~ 26639684 (-)
G80218 NA non-coding upstream 791579 27203031 ~ 27203394 (-)
AMCG00010364 inip,LOC107658659,LOC107558675,LOC107571239 other downstream 30238 26367932 ~ 26379747 (-)
AMCG00010343 hook3 other downstream 853905 25516064 ~ 25556080 (-)
G79601 NA other downstream 3045038 23359643 ~ 23364947 (-)
AMCG00010288 NA other downstream 3323640 23082655 ~ 23086345 (-)
AMCG00010271 NA other downstream 4427935 21964529 ~ 21982050 (-)
AMCG00010371 NA other upstream 758 26412210 ~ 26426658 (-)
AMCG00010442 LOC107672760,LOC107738293,LOC107592320 other upstream 3541238 29952690 ~ 29961324 (-)
AMCG00010458 LOC107396140 other upstream 4099518 30510970 ~ 30520381 (-)
AMCG00010478 znf367,LOC107568105,LOC107704585 other upstream 4661000 31072452 ~ 31080322 (-)
AMCG00010487 ppip5k2 other upstream 5542918 31954370 ~ 31997694 (-)

Expression


Co-expression Network