G80185


Basic Information

Item Value
gene id G80185
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 26635982 ~ 26639684 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU100015
gcagagctcgatcccagcaagctgagagagtgagatctcctacagccgcagaagtgggctgtagtgcgggcacaagcTGGCGGAGGAGCCCTTAACGCaggcgagatctcttatgacacaccgaggctcaggccgggcagccgggccacGGATTatactgccactgctagcgctcctcctttggaggaaaaagccctgtggacaaaaaaccaacacagcaagcagtcagaatatatatggcactatataaacacgactattatttttaaaaggctcttcttgtgaaccaaaactgaaacagaatacCTTGAAATTAATACCTTGAaatatgaagaaacaaaatgaaacatcaCATGAAACAATCTTTGCCGAGGAATCAGTTTAATGTTATTTGTCAGGTTATGTGAGCAAGCAGAACAGTGCATTGTGTGTTCAGGTCTGTGTTCACTAGGGTTAGGTATTGAAAATCAATTCCCATTCTGGAATCGGATACTTAAGGTGAGGAATTGGATACTTacttttataaaattaaaatgttgattcTGCTTATCGATTCCTGTGTGCGCATTTTCAGATAGACcagattttttttacatgtcATTTGTGAGGACCCGAACGGCGATCTGCCAGGAGCTTCCTCACTAATCTATGTGCGCTCTGGCGCTCAAGTggtgatctctacctgtctacagtatttcatgcatttgaaaaacacacattgtacaccattacaggtgttttcttacaactgtagtcagactAAGTGGATACAGTGATGACCCGCAAATACACATGGATTCgaaacggagactgaagagagatcgttttggaaatgccgtgtatatgaacacgactgattcaggggcatcagtgatactggcaatgacagtgatcattcgtgggtttgtgccagtgttgcgaaaacattgtgagtgaaacgccaggtccaaatggcatccagtgcttttactccactgatcaatacgcgattgctactgcacatagtagagtgcaatagcgcaggcacattgcacgcaaaataatgattcatggacattatcagcggaggagcatttattgcaatgctatatattcgtggagtaaaagtgttcacctggagagggctgtcaaaatgcagtgtgagggacgagctcatgcaggaaaagtggagaaacgtgtcctgtgtggactgtacgagctgacaggtatgcaggctaaatatatagtaaatagtttattgaaacacaaagctacagtgaataaaagcactgtatgttgaaaacaaagtgtactttagtgtacaattatgttttgatgaatgcaatagttatttttgaactaaaaaatattgcttgagcattattccaatatttacgtttacacttgtttcattctcttattgtctGCCGTTTTTGAGcgttttgcttattgtaggctatatagttatttatgttttgactgcagtgtgcacgtttagaaaaaaaagtgctttgttattcatagcaataatatttatgttttatgatcatatatcaataatcatatttaaataatccatTTGTGCTATacaaatgttggatttgatgttcatgaataaaacatatgaGTTTTATGCCAtagtttgcctttgattatcatatcacaACTGTTAAACAGCTATCGGTTACAAAGACCGGTTTTGGCacttgtaggtagttcgaattgtcaattgttaattgttaaagtgttaatttaacagttttgtaCACATATAGCTCTTAAAGGAGTCCTTAGTTTGTATGTagcctgctgatttttgttcatGGTATTCAGCTGCaactaaatgttttgtaaaataagacacagaataaatgtgtttgatatCAAAACGttgtacttcatttttttttttactacattGGAATCGAAACTGGGAATCCATAAGAATCGAAATCGGAATTGGAATCGCTAAAATTCTTTTAtggatgttttgtatttgtctatgttaaatgaaagtattttattttgaccttTACTACACTGCCATATCCATCTGCACATTGTAGTTTCAACAGGAGTATTTTGTGTTCAAATGTATGGAACATATCAGTTTTCCACTTTGTAATTTGCTATAAGTGGGTGAgagagttttgatttaatccatccTTTAATTTTCCTTTCCAGTCTGTTAATTTAAAGCAGTCATTTTAGGTTTGAAATAAACTGGTGAACTAAGCTGAAGGATAGGTAAAATTAATTGTACTCCGAGATGAGAAATCTGGGCAGAGCACTCAGATGTTGTCAGTAAAATAAACTAGCTAGAATTCCCAAGTCATTCAccttaaattactaaaatattcTGCAAGGGATCAGAACACTGCTCTttttgagaaagaaagagattaaaactgaaattgaaatgttttaaaagccgGGAAAGTCATTAAAAGCACAACAATTCTGAAGCAGAGGGGCCATCGATTCAAATGTGGTATGCTGGCACAGTCCTAGTTTGGGAACTGCTTTTTGGAAAGTTTTTTTCAAAAGCACTATCTTTCTTCTCTCCTAGGTTTGCTCAGTGGTTTTAACCAGTTCTTCATTTGATACTACATTTTGATACTCTACCAACCATCCCTCCATTTTCAATACCCACTTCATCAACTACAAGGTCACAGTGAGCCAGACCCTAACAGAGCGCATGGCCAGTCCAGCCCAGGGAAGCAACACCCCCCACAAACAATCACATGATGACAGGGCAGTTTggagtagccaatcaacctaagcaaCATATGTTTTGGAAGTGGGAAGAAACCATAGAGAACCCGGCAAAAACGCACGTGGAAAATATGCAAACTCTACACTGGCAGGCACTCAAGGCTGGAATCAAACCTGGctcccaggagctgtgaggcagcagcactaataACTACACCACCAGGCcacactttttatatttttgttcaaagAAAATGGATAAATAGATTGGTTTCAGTACCAACACGATTTGTTGCTATAGAAGAGGCTTAAGAATCAAACAACAAGATTAGCTAGTGGGAAGACAAATAACAGTAATTTCTCTTAGCCGTTATTCCAACAGCAGTTTCTAATCTTTCTAATCACTGAAAAGAAGCAAAAATATACCCAAAAACATACAGAACTTCTcttgtaaattaaaactattacaattaaaatacacacacatataaaagtCCATTCCCAGTTGTCATGTTAGGCAAGTTTGCCAACTTGAAGTCATTGATTACACATTAAGGTGCTTGATGTCATGAAAATAGGTGTTTCATGTCTTAGATACATTGCCTCTACATATGTCTTTAAtccatttcagtatttcatgcaATTGTCCTCTAAGCTACTGTTCCCCTACACATATTTCACCCACAAGATGAGGGGTGCTGTCCTCACTCTCTCCCATTCTGAAGTGGTAGAGTTTGTGAGATGAAGTGCTTCCCTCAGGGGCATTTTCCCAGAACTTGATGACAGCTTTCCCAGGCATGAACAACGGTTGGTGAAACTCCACTCGCACACTGGCAGGGGCTCTGACAGCATCAGTtcctgaaaattaaattaatcaaattcacTGTTTAAATGCTTACAATCCCACCATAAATCTTCATTATGGAGATACTCTGTGAATGACAAGCTCTGACAGTAAACACAGTCGTATTAATATAAGGCTCTACAGTAGGAAAAAGCAAGATGTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100015 True 3703 lncRNA 0.39 1 26635982 26639684

Neighbor

gene id symbol gene type direction distance location
AMCG00010373 NA coding downstream 108613 26506281 ~ 26527369 (-)
AMCG00010370 NA coding downstream 191074 26428907 ~ 26444908 (-)
AMCG00010363 ptbp3,LOC107658670,LOC107744247 coding downstream 388474 26225287 ~ 26247508 (-)
AMCG00010352 NA coding downstream 416169 26204482 ~ 26219813 (-)
AMCG00010351 NA coding downstream 433132 26197041 ~ 26202850 (-)
AMCG00010375 grin3a,LOC107653477,LOC107750958,LOC107702562,LOC107710005,LOC107554227 coding upstream 120438 26760122 ~ 26778863 (-)
AMCG00010376 NA coding upstream 220868 26860552 ~ 26861050 (-)
AMCG00010387 musk coding upstream 1093459 27733143 ~ 27753037 (-)
AMCG00010389 NA coding upstream 1139216 27778900 ~ 27781304 (-)
AMCG00010388 NA coding upstream 1158643 27798327 ~ 27809635 (-)
G80183 NA non-coding downstream 3894 26631779 ~ 26632088 (-)
G80182 NA non-coding downstream 5977 26629765 ~ 26630005 (-)
G80181 NA non-coding downstream 9650 26626032 ~ 26626332 (-)
G80150 NA non-coding downstream 224530 26409985 ~ 26411452 (-)
G80148 NA non-coding downstream 237624 26397739 ~ 26398358 (-)
G80218 NA non-coding upstream 563347 27203031 ~ 27203394 (-)
G80221 NA non-coding upstream 584138 27223822 ~ 27224149 (-)
G80234 NA non-coding upstream 638154 27277838 ~ 27278074 (-)
G80248 NA non-coding upstream 909952 27549636 ~ 27553011 (-)
G80250 LOC107575789 non-coding upstream 916747 27556431 ~ 27557033 (-)
AMCG00010371 NA other downstream 209324 26412210 ~ 26426658 (-)
AMCG00010364 inip,LOC107658659,LOC107558675,LOC107571239 other downstream 256235 26367932 ~ 26379747 (-)
AMCG00010343 hook3 other downstream 1079902 25516064 ~ 25556080 (-)
G79601 NA other downstream 3271035 23359643 ~ 23364947 (-)
AMCG00010288 NA other downstream 3549637 23082655 ~ 23086345 (-)
AMCG00010442 LOC107672760,LOC107738293,LOC107592320 other upstream 3313006 29952690 ~ 29961324 (-)
AMCG00010458 LOC107396140 other upstream 3871286 30510970 ~ 30520381 (-)
AMCG00010478 znf367,LOC107568105,LOC107704585 other upstream 4432768 31072452 ~ 31080322 (-)
AMCG00010487 ppip5k2 other upstream 5314686 31954370 ~ 31997694 (-)
AMCG00010509 fem1c,LOC106580179 other upstream 6353603 32993287 ~ 32999999 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000039_03087331_03101769 NA coding CI01000039 null 3086835 ~ 3103992 (-)