RNA id: TU99924


Basic Information

Item Value
RNA id TU99924
length 516
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G80112
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 26308543 ~ 26314251 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGATGTGCATTATTGCCTTTGCTAGCATTCATCTaccagtctttaaaaaaaaaataaaaaaaattcaaagaTGTATGCCAAGacatttctgtttcattcaCTACAAGGTAATACGGGTGATACAGCACTTACTAACCTGTGTGGTTCTTAAACCAAATAGGGTTGAGATTCAGAGGAGGGCTGAGATTTAGGATGTGGGGGTTTTTACTCTTTCGAAGGTGAGGGATGCAGAGCTTAGACGTCAGATAAGTTCCCCTTAGGTTGATACCAATCATAAGGTCCACTTTCTTCATGGAGGTCTCCAGAGTTCCAGTTAAATTGATGGCACTGGCATTATTTACCAAAATGTCAATTCCTCCAAATTTCTGCACAGCTTGTTCCACTGCATCACCAATCTGCTTCTCATCCCTCACATCCACAACACAAGGCAAGGCTTTCCCCCCAGCAGCCTCAAttTCTTCTGCAGCAGTGTAGATTGTCCCTGGCAGTTTGGGATGAGCTTGCGCCGTTTTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99901 lncRNA downstream 147285 26160330 ~ 26161258 (-) True G80104
TU99900 lncRNA downstream 149755 26158226 ~ 26158788 (-) True G80103
TU99899 lncRNA downstream 150388 26157596 ~ 26158155 (-) True G80102
TU99897 lncRNA downstream 179315 26128966 ~ 26129228 (-) True G80100
TU99883 lncRNA downstream 181238 26127056 ~ 26127305 (-) True G80090
TU99964 lncRNA upstream 53681 26367932 ~ 26379747 (-) False AMCG00010364
TU99968 lncRNA upstream 82550 26396801 ~ 26397078 (-) True G80147
TU99969 lncRNA upstream 83488 26397739 ~ 26398358 (-) True G80148
TU99971 lncRNA upstream 95734 26409985 ~ 26411452 (-) True G80150
TU99982 lncRNA upstream 97967 26412218 ~ 26419922 (-) False AMCG00010371
AMCG00010363 mRNA downstream 61035 26225287 ~ 26247508 (-) True AMCG00010363
AMCG00010352 mRNA downstream 88730 26204482 ~ 26219813 (-) True AMCG00010352
AMCG00010351 mRNA downstream 105693 26197041 ~ 26202850 (-) True AMCG00010351
AMCG00010350 mRNA downstream 190383 26081980 ~ 26118160 (-) True AMCG00010350
AMCG00010349 mRNA downstream 368428 25914914 ~ 25940115 (-) True AMCG00010349
AMCG00010364 mRNA upstream 59126 26373377 ~ 26375156 (-) False AMCG00010364
AMCG00010371 mRNA upstream 97959 26412210 ~ 26426658 (-) True AMCG00010371
AMCG00010370 mRNA upstream 114656 26428907 ~ 26444908 (-) True AMCG00010370
AMCG00010373 mRNA upstream 192030 26506281 ~ 26527369 (-) True AMCG00010373
AMCG00010375 mRNA upstream 445871 26760122 ~ 26778863 (-) True AMCG00010375
TU99273 other downstream 2943596 23359643 ~ 23364947 (-) True G79601
TU99198 other downstream 3222558 23082846 ~ 23085985 (-) False AMCG00010288
TU98958 other downstream 4326569 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 5226718 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 5367150 20931171 ~ 20941393 (-) True G79147
TU99963 other upstream 58491 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 5640133 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 6681199 32995450 ~ 32999999 (-) False AMCG00010509
TU101930 other upstream 9400700 35714951 ~ 35716672 (-) True G81716
TU102168 other upstream 10363446 36677697 ~ 36683818 (-) True AMCG00010602

Expression Profile