G79147 (cplx4,cplx4a,LOC107662952,LOC107719084,LOC107739741)


Basic Information

Item Value
gene id G79147
gene name cplx4,cplx4a,LOC107662952,LOC107719084,LOC107739741
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 20931171 ~ 20941393 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU98705
tttcttctatacattaaatataatgtataagtCAATTTAGAGCATGTGAGGAATATCATGAAAGCTGAATGTTTGAATAGAAATTGCTTTCAAGATTTCTGTGGACAGTTCTCCCTTACCTGATTAGAACAGGAACATCTTAAAACTGGTTTACTGGGATGAATCTTTTGTTGGCCACTTAAAAACTCTCCAGGATGATGTGCAGGTTTTGGATCATCCAAACATATCTGCACACAATCCCTACTGTAGCCCTACACCTAACCAATAATTTAACTGCAGTCCTAATCCTTCCTCTAACTCTAACCTAACCATAAACCAAACCCTAATCCTAACCATAAAACATTGTCACTGCAGATACCATACATATTCTTAAATACCTGGTGAGTTTTAAAATGGACAGATTGGTATTAGGAGCTATTAGCTTTTCTATCACATTACAGAGCATTTCTGTTCTGCCGCTGCTTTCATTTCTGTAAAGGTGGCCTGGGCTTTCTCCTTGATTTGGTCCATGTCCATGTTTTGGAGGTTTTGCATCTGCCCAAGAATGGagtccttctcctcctcctctactGCATCTTCATCCACCATCTTTCTCAGCTCTTCAGGTACATCCACATCATCTCCTGCCATCTGGATTGTGTTCTCATCTTGTTCACTCTTGGCAGTCTATATTTTTCTCGCAAATGCACCCTCAGAGTTGCTCTTTCTGCTTTCTTATTCAAAAACTCTGCATCCCTTTCCATCCTCCTCAACCACTTGTCTCTGGTACTCCTCATACTCTTCTCGGGTCATCCCCGCCGCTGCCGCTGGGTCTGCGGGGGCCCCACCctcttctttcttctcctcaCCTCCACCAAGACCCAGGTTCTTCACCTGGCTGCTTACCATACTTTTCAAGAGGAAGGACATGGCGCTCGCAGTTCAGACCCTCACTCTGTACAAGAATAACAATTACTCCTCTTTTCCCAGTTTTATGAAACACCTTGCTTTGGTCTCCCAAATAACAAATCCAACAAGAGCCTATGTAACAAGCCTGTGGCTGCCCGTCTGTGTTGTCACAGGCACACTG

Function

symbol description
cplx4a Predicted to enable SNARE binding activity. Acts upstream of or within regulation of neurotransmitter secretion. Located in terminal bouton. Is expressed in epiphysis; photoreceptor cell; retinal cone cell; retinal inner plexiform layer; and retinal outer plexiform layer. Orthologous to human CPLX4 (complexin 4).
cplx4 Predicted to enable SNARE binding activity. Predicted to be involved in regulation of neurotransmitter secretion and synaptic vesicle exocytosis. Predicted to be located in plasma membrane and synapse. Predicted to be part of SNARE complex. Predicted to be active in terminal bouton.

NR:

description
PREDICTED: complexin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98705 True 1069 TUCP 0.43 3 20931171 20941393

Neighbor

gene id symbol gene type direction distance location
AMCG00010242 NA coding downstream 150202 20770284 ~ 20780969 (-)
AMCG00010240 hcn1,LOC107374708,LOC107085810,LOC102226223,LOC103473886 coding downstream 328798 20591736 ~ 20602373 (-)
AMCG00010239 hcn1,LOC106568517,LOC108278484 coding downstream 404252 20505376 ~ 20526919 (-)
AMCG00010241 NA coding downstream 444031 20486176 ~ 20487140 (-)
AMCG00010233 NA coding downstream 746745 20165996 ~ 20184426 (-)
AMCG00010248 NA coding upstream 26279 20967672 ~ 20972426 (-)
AMCG00010246 NA coding upstream 182609 21124002 ~ 21173380 (-)
AMCG00010265 NA coding upstream 649575 21590968 ~ 21591558 (-)
AMCG00010264 NA coding upstream 720197 21661590 ~ 21681366 (-)
AMCG00010263 NA coding upstream 815787 21757180 ~ 21772537 (-)
G79143 NA non-coding downstream 18988 20911411 ~ 20912183 (-)
G79092 NA non-coding downstream 463475 20467305 ~ 20467696 (-)
G79088 NA non-coding downstream 514169 20416790 ~ 20417002 (-)
G79082 NA non-coding downstream 638754 20292143 ~ 20292417 (-)
G79077 NA non-coding downstream 728170 20199049 ~ 20203001 (-)
G79179 NA non-coding upstream 109418 21050811 ~ 21052563 (-)
G79234 NA non-coding upstream 168194 21109587 ~ 21112212 (-)
G79257 NA non-coding upstream 545314 21486707 ~ 21487020 (-)
G79297 NA non-coding upstream 695051 21636444 ~ 21637006 (-)
G79298 NA non-coding upstream 696286 21637679 ~ 21637897 (-)
AMCG00010234 hint2,LOC106585387,LOC107720264,LOC103469931 other downstream 735787 20188658 ~ 20195384 (-)
AMCG00010206 NA other downstream 2059089 18863268 ~ 18872082 (-)
G78610 NA other downstream 2985410 17945235 ~ 17945761 (-)
AMCG00010190 NA other downstream 3075350 17852867 ~ 17855821 (-)
AMCG00010188 NA other downstream 3086782 17840707 ~ 17844389 (-)
AMCG00010247 NA other upstream 112231 21053624 ~ 21081825 (-)
AMCG00010262 shc3 other upstream 599626 21541019 ~ 21572512 (-)
AMCG00010271 NA other upstream 1023136 21964529 ~ 21982050 (-)
AMCG00010288 NA other upstream 2141262 23082655 ~ 23086345 (-)
G79601 NA other upstream 2418250 23359643 ~ 23364947 (-)

Expression


Co-expression Network