AMCG00010234 (hint2,LOC106585387,LOC107720264,LOC103469931)


Basic Information

Item Value
gene id AMCG00010234
gene name hint2,LOC106585387,LOC107720264,LOC103469931
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 20188658 ~ 20195384 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010234
TTAAGTTTCTGGTGGAGGAATTGGTTGTGTTTATTAGCTCTGGGTTGAAATATTGAGGTTAAAGATAAGCATGCATTTGTTGAATTTACCGACACGTTTTGTGAAAGTAAACTTCGTTAATGTCGCCGCATTGCTTTTTGCACCTACTAGACTTACAAGCTGTTGGGAGAGAGGGTACTGCACTGGAGTGACATCTAACGGTGAAGTAAATAAAGCTCGTTTGGCAGAAGAAGCAAGAAGGAAATATGGAAACCATGTTCCCACAATCTTCTCCAAAGTAATTGACAAGACCATACCTGCAGACATCATTTATGAGGATGAGAAGTGCCTCGCATTTCGAGACATTAGTCCCCAGGCCCCTGTGCATTTTCTTGTAATTCCAAGGACTCCTATCCCAAGAATCAGTGAGGCCAAAGATGATGAAGCACAGctTTTAGGTCATCTCTTGATTGTGGCTAAAAATGTGGCAAACAAAGAGGGATTGCAGGAAGGTTACAGAGTGGtTATTAATGATGGGACGCATGGAGCACAGTCTGTTTATCACCTTCATATCCATGTACTGGGAGGACGACAGCTGACTTGGCCTCCTGGTTAGCAGgaagaaatgtttaaaactaGCAGATTTGTTTGTATCATGGTATGTCACTGTTATTAACACACATATGTTCAACTGTGGTAAGGGAATGGACTGTATTGCTATGAAAAAAGTTGTGTATaaagttacattaaaataatttataattgagTCTACCCTTAATGTCAATGAGCACTTGCACACAGGAGATCATACACACTGTTGCAACTGTCTAAAATGAAAACCGTAGCACTTACACACAAAGGCTACCATCTCCTGATATCTGAACTCTGTTCCAGTGGCCTGATTTGTGACACCATGTTTGTCTTAATCATGTGAGTGAAACTGGAGGTCATTCCCCAGCAGTAAACTACACACATCTCCAGCTTGCTGAGTCTATTTGATTTCTCACTACATTGGCAAACAGGATAATAGATTAACTAATTCAGATTGTATTAAGGAACACTAGGGCAGATATCCAAATCAATTGTTATTTGAtatcaaatgttttaactgaATGGAATCTAATCGACTGAAGAAGAAAACCATAACCTACTGTAAATGAAATTGTGAATATATGCctcattttataaaacaaacatatagttaaaaaaaaagctaaatataatgcatcattattattaaaaataaaataaaggtctCTTGCCCAACATCTACATTTGTATGCATATTTGATTGTCATAGTTCTCTGTGTCATTGTACTCTTTTCTTGTGCCTGAGGCCTTTTTTGTCTTCAGTGTTCATTtgttgtctgtctgcctgcctttAATGTCATA
>TU98624
AGAAAACGCATTGCAGCCTAGAAGATTTCAAACTGCAATCATGTGTAGGTTAATTTCGTGAAATCCACAATGATGAAGAACAAATAAACTGCAGAACAagattaattatacatttcctgTCACCAAACATCAACTCTCAACTTCTCTTAACACAAAGAAGGAACTTACCTCTGGCAGCTGTTTTGGCAGCCGTAGCTGACTGTGTGGTTTGTCGTCAATCTGAAATCTGATGGGATCGACTCGATTCCTGCGGTGGCCCCGGGGGACAGTTGTTTCTCCACGCATCCAATAGAAGTTCACTTGAGGCCCAAAATCTGGAAGCACATCCAAGCATGCGTCTTATCAcgcattgtattttttaaaaagagcaTGCTTCCTTATATATAGCATTACCATTGTACCACATGGTTAAGATGCCATAAAATACGTAAATGGGAGAGGATAAAGAAACAGGATAAGATTCACCTTACCTAGGTTGGACATGTTCAGGACAGGGTTATATTTAGCTAACGCTGTGGTAACACCAGATACCAGGTTAACCAGAAAAGGCGCAACTAAATGCTCCTGTTCTCTATGCAggaatggttttcttttttccatgtaATACTTCTCCTGTAAGAGTGCATTACAGACAAGGGATCGGAGCTCGTTGGACACATCACTGTCAATGACGGCCGAGGTGTGTTGGCCCGCCACTGGGGAAGCCTTGCTGGTCCCCTCGCTGGCCTTAGCATCACCTCCGAGATACAGCGCATCTGGAAGGCCCGGTAGGTATGCAGTCTTGGTAAAATGCTGGTACCATTTGTCCGCATTCAATGCAAATGTTTGCGGGTACAGCACATACTTCCTTCGCTGGAGTTTAGTAAGAAGTCTGAGTTTCTCTTGCACCGTCGCCGCGGATCGCACTTCATTGTGATACGCCTCTTCCCTCCGCTTCTTAGCGGATTTACTTTTCGCCGTTGGAGATGGTGTTATTGGAGGGTACACCGCTTCTGTGACTGAAGGCTTTGCGTGGAGACCCCTCGAAACCCTTCCAAAAGTATGAACAAATGCATTCTTAGAGAAATGTGGGTGCAAGGACACCCAACTGGACGCCGCCATTTTTGTATAGTAGCATCGAGTATTGAAACTCTCACGAGATGTAAACGGAATGACAAATACAACGTCACGACGCTTTTTGTCCTGCGCAGACGTAGCATGGATACCTTTGGTGGAGGGAATGCACAGCAAATACGGAAATagcttttaaaagcagttaaaaacaatcatcaaaGAAACAGTCACAGTAAAGCACTGCAGTGTTTCTCCTATCAATTAAAACTCCTCccttaataaaAGAGGGTACTGCACTGGAGTGACATCTAACGGTGAAGTAAATAAAGCTCGTTTGGCAGAAGAAGCAAGAAGGAAATATGGAAACCATGTTCCCACAATCTTCTCCAAAGTAATTGACAAGACCATACCTGCAGACATCATTTATGAGGATGAGAAGTGCCTCGCATTTCGAGACATTAGTCCCCAGGCCCCTGTGCATTTTCTTGTAATTCCAAGGACTCCTATCCCAAGAATCAGTGAGGCCAAAGATGATGAAGCACAGctTTTAGGTCATCTCTTGATTGTGGCTAAAAATGTGGCAAACAAAGAGGGATTGCAGGAAGGTTACAGAGTGGtTATTAATGATGGGACGCATGGAGCACAGTCTGTTTATCACCTTCATATCCATGTACTGGGAGGACGACAGCTGACTTGGCCTCCTGGTTAGCAGgaagaaatgtttaaaactaGCAGATTTGTTTGTATCATGGTATGTCACTGTTATTAACACACATATGTTCAACTGTGGTAAGGGAATGGACTGTATTGCTATGAAAAAAGTTGTGTATaaagttacattaaaataatttataattgagTCTACCCTTAATGTCAATGAGCACTTGCACACAGGAGATCATACACACTGTTGCAACTGTCTAAAATGAAAACCGTAGCACTTACACACAAAGGCTACCATCTCCTGATATCTGAACTCTGTTCCAGTGGCCTGATTTGTGACACCATGTTTGTCTTAATCATGTGAGTGAAACTGGAGGTCATTCCCCAGCAGTAAACTACACACATCTCCAGCTTGCTGAGTCTATTTGATTTCTCACTACATTGGCAAACAGGATAATAGATTAACTAATTCAGATTGTATTAAGGAACACTAGGGCAGATATCCAAATCAATTGTTATTTGAtatcaaatgttttaactgaATGGAATCTAATCGACTGAAGAAGAAAACCATAACCTACTGTAAATGAAATTGTGAATATATGCctcattttataaaacaaacatatagttaaaaaaaaagctaaatataatgcatcattattattaaaaataaaataaaggtctCTTGCC

Function

symbol description
hint2 Predicted to enable hydrolase activity. Predicted to be active in mitochondrion. Is expressed in brain; head; inner ear; and somite. Orthologous to human HINT2 (histidine triad nucleotide binding protein 2).

NR:

description
PREDICTED: histidine triad nucleotide-binding protein 2, mitochondrial isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010234 False 1371 mRNA 0.38 5 20188658 20192929
TU98624 True 2409 lncRNA 0.42 5 20188787 20195384

Neighbor

gene id symbol gene type direction distance location
AMCG00010233 NA coding downstream 4232 20165996 ~ 20184426 (-)
AMCG00010232 NA coding downstream 150402 20033220 ~ 20038256 (-)
AMCG00010230 NA coding downstream 187245 19999324 ~ 20001413 (-)
AMCG00010229 arhgap24,LOC108278970 coding downstream 403166 19772619 ~ 19785492 (-)
AMCG00010225 NA coding downstream 629735 19557432 ~ 19558923 (-)
AMCG00010241 NA coding upstream 290792 20486176 ~ 20487140 (-)
AMCG00010239 hcn1,LOC106568517,LOC108278484 coding upstream 309992 20505376 ~ 20526919 (-)
AMCG00010240 hcn1,LOC107374708,LOC107085810,LOC102226223,LOC103473886 coding upstream 396352 20591736 ~ 20602373 (-)
AMCG00010242 NA coding upstream 574900 20770284 ~ 20780969 (-)
AMCG00010248 NA coding upstream 772288 20967672 ~ 20972426 (-)
G79070 NA non-coding downstream 34684 20138766 ~ 20153974 (-)
G78998 NA non-coding downstream 424008 19725424 ~ 19764650 (-)
G78970 NA non-coding downstream 562989 19625416 ~ 19625669 (-)
G78930 kcmf1,LOC107684340,LOC107596001,LOC107691714,LOC107600595 non-coding downstream 727491 19459264 ~ 19461167 (-)
G78922 NA non-coding downstream 759114 19429266 ~ 19429544 (-)
G79077 NA non-coding upstream 3665 20199049 ~ 20203001 (-)
G79082 NA non-coding upstream 96759 20292143 ~ 20292417 (-)
G79088 NA non-coding upstream 221406 20416790 ~ 20417002 (-)
G79092 NA non-coding upstream 271921 20467305 ~ 20467696 (-)
G79143 NA non-coding upstream 716027 20911411 ~ 20912183 (-)
AMCG00010206 NA other downstream 1316576 18863268 ~ 18872082 (-)
G78610 NA other downstream 2242897 17945235 ~ 17945761 (-)
AMCG00010190 NA other downstream 2332837 17852867 ~ 17855821 (-)
AMCG00010188 NA other downstream 2344269 17840707 ~ 17844389 (-)
AMCG00010183 stoml2 other downstream 2709867 17473829 ~ 17478791 (-)
G79147 cplx4,cplx4a,LOC107662952,LOC107719084,LOC107739741 other upstream 735787 20931171 ~ 20941393 (-)
AMCG00010247 NA other upstream 858240 21053624 ~ 21081825 (-)
AMCG00010262 shc3 other upstream 1345635 21541019 ~ 21572512 (-)
AMCG00010271 NA other upstream 1769145 21964529 ~ 21982050 (-)
AMCG00010288 NA other upstream 2887271 23082655 ~ 23086345 (-)

Expression


Co-expression Network