AMCG00010183 (stoml2)


Basic Information

Item Value
gene id AMCG00010183
gene name stoml2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17473829 ~ 17478791 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010183
TTCTCGGTGCTGTAACTCGGGTGCTTCCTGCTGTCAGCCGGGGGTCAAGTTTGAAAAAGGTGTCCGTGATTATTTTGTCTGCATTAAAAACGATCTATATAACAAAAGATGTTCAGGACGGTGTGCCGGGCTGGAGGAGCCCTTTTAAAGCAGCCCAGGCGAGGGGTGCCCCTGCAGTGGGTGGTCCCCGCCCAGCAGCGATGGGTGTCCAAGATGCCCATGAACACGGTGGTGCTCTTCGTGCCCCAGCAGGAGGCCTGGGTGGTGGAGAGGATGGGCAAGTTCCACCGCATCCTGGAGCCGGGTTTAAACATTCTTATCCCAGTACTAGACAGAATTCGATATGTCCAGAGCCTGAAGGAGATTGTAATTGACGTACCGGAGCAGTCTGCTGTATCTCTCGATAACGTGACTCTGCAGATCGATGGGGTGCTATATCTTAGAATAATGGACCCTTTTAAGGCCAGCTATGGTGTAGAGGACCCCGAGTACGCTGTCACTCAGCTGGCTCAGACCACCATGCGCTCCGAGTTGGGGAAGCTGACCCTTGATAAAGTTTTCCGGGAAAGGGAGTCCCTCAATTCCAACATCGTGCACTCCATAAACCAGGCAGCAGACGAGTGGGGGATCCGATGCCTCCGGTATGAGATCAAGGACATTCACGTCCCGCCCCGAGTGAAAGAGTCCATGCAGATGCAGGTGGAGGCTGAGAGGAGAAAGCGAGCGACCGTACTGGAGTCCGAGGGGGCAAGGGAGGCGGCCATCAACATAGCCGAGGGCAGCAAGCAGTCCCAGATCCTGGCGTCTGAGGGACAGAAGGCCGAGCAGATCAACAAAGCATCTGGTGAAGCCAATGCAGTTTTAGCCAAAGCAGAAGCCAAAGCCAAAGCCATCCGTCTTTTGTCCGACGCTCTGGCTCAACAGAATGGAAATGCCGCTGCCTCTCTGACGATAGCAGAGCAATACGTGTCCGCGTTCTCCAACCTGGCCAAGGAGTCCAACACCATCCTCCTCCCCTCCCAGACTGGAGATATCAGCAGCATGGTCACACAGGCCATGACTATATACAGTACGTTGGCCCAGCAGTCCAAACCCCCTGCAGAGAGCAAAGACACGGAGTCTCCTCAGACGCTGGCTATGGAGGAGAGAGGCCGGAGTGAGCCACTTTCTTCCCAGTAGACAACCCAGCTGGCCAGGGCAACAGAACTACCAGCCTGAAGACTACACCTCTCCTGTCAAAGACTGTTGAAGAGAAAATGGACACACAGCCCCAGATACGCcacctgtttcttttcttttcttttcttttcttttcttttcttttctcgatgtgtcttttgtttttcatttggtgGTAATCGCGGAGAGAATTGCTTGTCCTATCTTCAGGACATCTCAATCCCAACATGGCAGCAGTTTAAATTTAAAGGAGTATCTTTGTGTTCGTTaactttgtgtgttttcattcataACATCTCCACGTATGATACTCTGTCAGTGTTCCTGCTAATTCGAATGCTGTAGGCCGTGCTGCCCGAGACTTAGAGCTGAAGGAGCGGAGGTAACCTGGGGATTAGATATGATCGATAATGTGCTCACCTGATTGCACAGTGCTGTATTATTAGAGCTGCCCAACACTACATATTCTCTGTAATGATTGGCTTACATCTCCTAGCTTTTAAGTCTTCAGTActcttttaaaaagcatttttgctGGGGCGGTTTCTGTCGCACATTACAGTTGGAGCATAATGGACAGTGTATACCAAGATATCTAGACTTTCAGAATCATCTGATGTTAGTGATGGAAAtgcttttcagttatttttccttcattcattgtttttggAATCGTTGATTTGTTGGTTCACTGACAGTAACTATTTTGGAAGTGATGTTCCTAATAATAGGGTACATTTTTCAGCTGCCACCAAGCCCTGTAATAATCTTATTGCTTATATTTCtgcatgtattttcaaatacacatACTTATTTGCGAAATAAGGTGTCTTGCGGTGAATGCTCTCAAAAAAGGCAAATGTGTCTCTGTCCTGAAGTGCAGCTGATGGTTGTCGCTACTGAGTGATATCAGTAGAACGGTTCCTTGCATCGTGCCTCATCCCTGGACTGTGATGTGCTACAGACTGAGCTACAGGAGTGGAAAGATGGAATAAAAATAAGCTTCTGCTCTCcgattttcaaaaataaatgattcttCTTGATTTCCCACCTCGTCCATAACTGCTTAAAAATAACTTGGGAGAGTTAGTTATCATTACTTCACTGTAGGAATTCACATCTTTAAAGAATATGATACTGGCATCCAATCCAAACTTTGAGGATTAGTGTCTGCATTTCCTCTCAGACTTCATTCAATTACTTCAATTCCAGTGTGTCAGTTGGAGGGAACCAATTCATAATAAAAGGTTTTGATCATATAGcaagccttttattttaaaatctacttGTGAATAAAACCTtattgtgtctttttatttgaacatgtagcatgtgtgtgcattattcttactgtaaagcaaaacattattaCATGTTGGTTACATCATTAATCCGGAGTGTTACTGGGTCCCATTCAAGTTCAggatttattagttttttccaAAAATAGATTCTTAATTGAGTGATATTGAACTATAAACTAATGAAACTCTAAAATGTAGGAGGTGGTTGTACTTGGACTGGAGGTTGGATTGGTTGGAGGTGTTGctatatgtatttaactatATGTGTGAAGAGGACTATTTTGCCCCTCTGACCTACAGCTTTGTACAGGGCTGTTATGGAAGTCTTTACAAAGAAGGTTTCTTATATTTCTGAGGCTGAATTACTGTACTGCCATGTACTGAGAAGATGTGTGAATGcgttgttttttattattataaaccttGCAGGTGAATTGTTCTTCTGGTGttgtttcaaatgcaaatagAGTCACAAATCAAT
>TU97957
TTGTACTTGGACTGGAGGTTGGATTGGTTGGAGGTGTTGctatatgtatttaactatATGTGTGAAGAGGACTATTTTGCCCCTCTGACCTACAGCTTTGTACAGGGCTGTTATGGAAGTCTTTACAAAGAAGGTTTCTTATATTTCTGAGGCTGAATTACTGTACTGCCATGTACTGAGAAGATGTGTGAATGcgttgttttttattattataaaccttGCAGGTGAATTGTTCTTCTGGTGttgtttcaaatgcaaatagAGTCACAAATCAATCGATCGATGTCATGCGTTTGAAATTAG

Function

symbol description
stoml2 Predicted to be located in membrane. Orthologous to human STOML2 (stomatin like 2).

NR:

description
PREDICTED: stomatin-like protein 2, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010183 True 2964 mRNA 0.45 10 17473856 17478791
TU97957 False 303 lncRNA 0.38 1 17473829 17474131

Neighbor

gene id symbol gene type direction distance location
AMCG00010182 NA coding downstream 221 17465112 ~ 17473608 (-)
AMCG00010180 NA coding downstream 21341 17440183 ~ 17452488 (-)
AMCG00010178 NA coding downstream 70322 17395137 ~ 17403507 (-)
AMCG00010179 NA coding downstream 85773 17380188 ~ 17388056 (-)
AMCG00010170 NA coding downstream 120380 17353153 ~ 17353449 (-)
AMCG00010181 fam214b,LOC103397924 coding upstream 4714 17483505 ~ 17493788 (-)
AMCG00010189 NA coding upstream 343878 17822669 ~ 17825492 (-)
AMCG00010195 NA coding upstream 596141 18074932 ~ 18111982 (-)
AMCG00010196 NA coding upstream 636723 18115514 ~ 18126029 (-)
AMCG00010205 NA coding upstream 1345614 18824405 ~ 18850929 (-)
G78511 NA non-coding downstream 9266 17464226 ~ 17464563 (-)
G78510 NA non-coding downstream 9811 17463477 ~ 17464018 (-)
G78509 NA non-coding downstream 13325 17458889 ~ 17460504 (-)
G78508 NA non-coding downstream 15356 17457944 ~ 17458473 (-)
G78470 NA non-coding downstream 65630 17407991 ~ 17408199 (-)
G78600 NA non-coding upstream 338769 17817560 ~ 17821172 (-)
G78609 NA non-coding upstream 457331 17936122 ~ 17936577 (-)
G78614 NA non-coding upstream 490378 17969169 ~ 17969368 (-)
G78615 NA non-coding upstream 490849 17969640 ~ 17969841 (-)
G78616 NA non-coding upstream 494712 17973503 ~ 17976065 (-)
AMCG00010169 cnot6l,LOC107752360 other downstream 178314 17282646 ~ 17295515 (-)
AMCG00010142 LOC104932682,LOC108255669 other downstream 1249788 16209319 ~ 16224041 (-)
AMCG00010082 NA other downstream 4003574 13347541 ~ 13470255 (-)
G77544 NA other downstream 5744664 11728503 ~ 11729165 (-)
AMCG00009989 NA other downstream 9152485 8314109 ~ 8321344 (-)
AMCG00010188 NA other upstream 361916 17840707 ~ 17844389 (-)
AMCG00010190 NA other upstream 374076 17852867 ~ 17855821 (-)
G78610 NA other upstream 466444 17945235 ~ 17945761 (-)
AMCG00010206 NA other upstream 1384477 18863268 ~ 18872082 (-)
AMCG00010234 hint2,LOC106585387,LOC107720264,LOC103469931 other upstream 2709867 20188658 ~ 20195384 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_06738434_06742551 STOML2.L, STOML2, STML2 coding CI01000304 null 6738254 ~ 6742551 (-)