AMCG00010142 (LOC104932682,LOC108255669)


Basic Information

Item Value
gene id AMCG00010142
gene name LOC104932682,LOC108255669
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 16209319 ~ 16224041 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010142
CAACAGTcgtaatacaaatatatcccTGGCTCTGGGCCTTCTAACATCTTAGAAAAGGGGACTGCCTTGTTATTCTTACCCACAGCCTCCTGGTCTTATTCACTTCACAcaactgtgagtgtgtgagagaaagcAGAGTGCAACATGTCGGATCAATCTCCCTTCGATGTGGACGTGATCACCCTGACCCGCTTCGTCATGGAGCAGGGCAGGAAAGCCAAGGGCACCGGGGAGCTGACCCAGCTGCTCAACTCCATGCTGACGGCCATAAAGGCCATCTCCTCAGCTGTCAGGAAGGCGGGCCTGGCTCACATGTATGGCATTGCGGGCACCATGAACGTCACTGGGGACCAAgtgaagaagctggatgttCTGTCCAATGACCTGGTCATCAATATGTTGCAGTCATCCTACAGCACCTGTGTGTTGGTCTCTGAGGAGAACAAAGAAGCACTGATCACCCCACCGGAGAGAAGGggtaAATACGTTGTCTGTTTTGACCCACTCGATGGCTCCTCCAACATAGACTGCTTGGCTTCCATAGGTACAATTTTCGCCATCTACAGAAAGCCCTCTGAGAAAGATGCCCTGGTGCCAGGCAAGGACATTGTTGCAGCTGGTTATGCCCTCTATGGCAGTGCCACCCTTGTTGCACTCACTACTGGACAAGGAGTGAACTGCTTCATGCTGGATCCAGCAGTTGGAGAATTTATCCTTGTGGACAGAAACATCAAGATGAAGAAAAAGGGGAAGATATATAGTGTTAATGAAGGCTATGCTAAGTACTTTGACCCGGACGTGACCgaatatttgaagaaaaagaagtTCCCAGAGgaTGGCAGTGAACCTTATGGCTCCAGGTATGTAGGCTCTATGGTAGCTGATGTTCACCGCACTCTGATATATGGAGGGATCTTCATGTATCCAGCCAATAAGAAGAGCCCTAAAGGAAAGCTGAGACTCCTGTATGAATGCAACCCCATAGCGTTCATCGTGGAGCAGGCGGGGGGCGTCGCGACCACAGGGACCCAGCGCGTGCTGGACGTGCAGCCGGAGAGCATCCACCAGCGTGTGCCCTGCATCTTGGGCTCCCCCGACGACGTGGAGGAGTTCCTGGCCTGTGTACAGAAACACCCCAAGCGCAGCTAACTGCCCAGACCGGCGTCCTCACGCACTGCTCTCATCCCCTGTGCTTTTAGGCTGCAATTAGACTGTTCTCTTCAAAACCTAGTGTCAGATGCTTAACAATTATGACTACTAAAAAATGTTGCATAGCACAGCACATTGTTTTGCTGAGTTACTGGCTCAGCTCCTGTGATGAAAGGTCATTAGGTCACTCCTATTAGAGGATTATTACCCCATTCTAAAtactttattcatattttaaagtcaCATCGGCAACAATTTCTTTTCATaagaaacattacaattaatccGGCAACACATTatgattgcaaattaaaatattctttaGGAATTTAAGGTCGGTTCCATATCCCATTTGcccactttttttaattaaccattgccattttaatcaGATAGTAGGCTTGTTTAATGTGGTTTTCATGAAAAACTACAAGTGAAACTTGCATTAGATTAGTTCAGccaataaatgcatttacactAATTTGAGATCAATTGAAATATAGCAAATTACACAGGGAAAGTTGCttatcaacatttttaaaataagtaattccaAAAAGCACGGTCCCTCAAGTCCAACAAGCTATTTTGATCTGGTCCGTGACTACAGAGGAATTAAGAGAATATTAGaaactattttgtgttttatttggagACTTCCTGTATCCcaccattacaaaaataaagtgttttctcTCCATTACAAGTAAATGTCTGTAGGCCTGTCTCCGAGAATTCATCTCAATCAGAGATTTAACGTATGGCTGGTCCTTTCACACAGAATCAGCCCTGGAAACGCCGACAGGCCTGCTGTGTTTTCAACATTCAGAGCAGGGAGGGTCTAATCTTAGCTCGGGGCGTTTCTGTTCAACAGCTGAGAAACTCCTGCTGCACTGTCCCGGGCAGAGTGCTGAGTCAGCGCGGGGGTGTTGACTGTAAACACTACCCCTCCCTCTGCTACAGTCATATTTCTAGGAATACCACCAGCTCTCTCGCACGGAGTCTCGCGCTTTAATTCTGGCATGCTGTTGTGTAGAAATAATCATTTTTCACATGCCCTCACCACTGAAACCAAAGAGACACAACAGGATGTGGGAATACTGTACATTGTTTTCTAAAGATAAGATTAGGGTTGAAAAGGGATTCAGCAAGGAAATGGGgaagaatgaaatgaaaaccaaactGACTCCTCATATTTGAATGACAAATTTAGCTTATCAAGGTGTTCACTAGGAAAAAAGAATAATGGTTTGCTGCATTTCAGCTAAGGTGTAGCTGTAACTCCCAAACCATTTAATTCAGgccaaacatgaaaaagaaaacaacgtATTCAAAAGTAGACCATACATTGGAGATCTTAATACTTTGccacaaaaataaagttttcatTCATCTACTGAAGCCACATGCATCACAATTAACATGGAAGTTGGTCAGAGAATATCTATATACAGAGACTGAAAAAAAGATTGCATactttaattacacattatGAAAGCATGTTTCCTTGTGTGGCCTTAAATTTAATTGGAAATGGGAAACAGACACTCATAGTGCATTTATGGCACAACAGGAAATTCCAGAGTACTGCAGTTTAAA
>TU97592
TAATGGTTTGCTGCATTTCAGCTAAGGTGTAGCTGTAACTCCCAAACCATTTAATTCAGgccaaacatgaaaaagaaaacaacgtATTCAAAAGTAGACCATACATTGGAGATCTTAATACTTTGccacaaaaataaagttttcatTCATCTACTGAAGCCACATGCATCACAATTAACATGGAAGTTGGTCAGAGAATATCTATATACAGAGACTGAAAAAAAGATTGCATactttaattacacattatGAAAGCATGTTTCCTTGTGTGGCCTTAAATTTAATTGGAAATGGGAAACAGACACTCATAGTGCATTTATGGCACAACAGGAAATTCCAGAGTACTGCAGTTTAAATCTGATTTACCGAGTGTCCCCATGGAGTTTAATACAGATCATTTCCCAACATTTCTctacaaggaaaaacaaaaccttgcaCGAGCCAAAAACTTCCAAAATTTATTTGAGTAACTCTGATATGAATGCAAATATTGTAAATCAAGGAAGACATTTGAATTTTGGCCATAGCAGAAAGGTTAAGGCTAAACTGGAGACTGATCAGTTTGACCTCTGAGCAGTTCTGAGGAAGGTTCTTGAATTAGTATTTCTTGGTAGACCCAATTGCTGAACTTTGTAACACTGACATGTACAATTAATCCAAATAAGAGCTTCATATACAGCAAGCAAACTTTAGACCAAAGTCCTAAATTAATCCAAGGTTCAGATGTAGAAAAGCATAGACTGGTGCAAAACCAAAACACTCCCAAGAAGCTTTTGTTGGGCAAGGGATCCACCACAATAATTGAGAAAACGAGCCACTTCTACCACTGAGAAATTAAGgataaaactttatttaaacattgaaatataaaaacatggaTCATGTGCACTGCACAGCATAACGGAAAATCTGTGCATCACAAGAGACTGCTATCTttagctggaaaaaaaataaaaaaaaaaaattacaagacattgaaaaattaaaaatcactaGAAGAGCAGCATTGCAACAATGCCCTTGTAACAGTGTCATTTAAAACcagcagaaattaaaaatgttttgctccCGTCTGAGCACCATTCAGCTGCAAATGCACATCAGTCCTTTAAATCTCACAGAGTTTAACACTCGGCCCGTTTCACGTGGATTAAACCAGAGGGTAGCTCGCTGCCGTCGCAATTCCACAGTGATTGTTGCGATCTTTGGCCATGTAGATGTAGCCCTTGTCGCCCCACTTCTCACTCCAGCTGCacaagggagagagacagaattaGGATCTCATACATCACTGCATTAAGATGGTTTGACACATTAGAGTCTGTATAATTATGCTGTCTGGAGATCTCTTGCTCCACAAGTCCAAGTCatgcatgcaaaaaaaaaacagatgttttacTCATCTGCCCTGGTTGTGCAAGACCATAGCAAGAAGCTACAAATGACTAATCATATGCCTTGTGACAGGTAGAAGTCTGAATCATGGAAAAGGAAACCCAGAGTACCTCTAGCCCTTTACATGGAAAGGTTGTTCACACAAGAGGAAATGTAGTAAAATCAAGCCTGAGCATGATCTTCTCAGAGAGGCTTTACCTGTTCTTGACAATCCAGTATTTCTTGCCATCTTCATCTTCTCCCTGGTATCCATAACCCACAACCAGTACACCATGATCCAGCTCCTGACTGCTGCAGTCCTTTTCATAGTAGATCCCTGACTGATAGAACTGGAAAGACTCATGTCCGGCATCGATGGCAACAGAGACGGGCCCCACAGATGCCACGGCCTTCATCAGGGCTCGCTCTTTGCCACTAGGAATATCCACAAAGCCAGTGTCGTTGGCAGAGTTGTACTGAGGGTCGTAATGACAGGGCTGGTCATCAGTTGCCAGGTATGGGTAGGCTTCCTCAGAATCGAGGCCATGGTTGTCCTGGATGTACTGGAAAGCCTGATCCATCAGACCACCATTGCAGCCCTGGTTCCCCTCCGGACGAGAGCAGTCCACTAGGTTCTGTTCGCTCAGGGAGACCAGAGTGCCACTCTTCCTGAAGTGCTGGCCTTCCAGAGCTCCAGTGGTGCTGAATGCCCAGCAGGATCCACACTGACCCTGATCCTTCACAGGGGTGACATAGCCCTTGTCTCTCCAATCCACCTTGCGTGGGGCCTCGAAGAAGTTGGGCTCGAGAAACAGGGAGCCCTTGAACTTCCTCTCCACCGACTTGTTGAGTTTGTACCCATTCATCAGCTGTCTGAACTCTTCACTGGTCATGTCACCGAAGTGGTTCATTCCCAAACGATAGGTATGCTTGCCAAGCGAATGCTCGAGGTTGTGCAATTCAATCTTCCTCAAGTTCTTCTCCCACACCATCCTCCTCCAGCCTTCTTCTTTCTCATGGTACTTTTTAGTGTGCCAGCTTTTCCACAGCTGCCAATGATCATCCAGCTGCGGGTCTAGACTTGGAGCAGCAAAGACTGCACTCAGGCACAGCGACAACAGACTCACGCAGAGGTTCATGGCGGACTATCCGGAGAGGAATAAACACGTTGGATTATGAAGAATGTGAACGCAAACGCATTCTAGATTCGATCACATATAGAATTACAGGAACTGGGGTAAAAACATGGATATTTCCCAAAAACACAGATTCTCCAAACAAAACCACTAGAcaacagacaagaaataaaataaaggaaactaGTTGAACCCCACTTAGGATGTAATCGGAACCAATGGAGGGGGGGAACAAAAAGCAGGAAAACATCACGTGTTCACAAGCGGCCGGAGTGACCACAGCACACATTTACACGACCCACTCGTAATCGGGTCATATGCATAAACGCTGTTGCTTATGCGTTTGTGGGAAAGCAGCCGATCTCCAGGCCGGGCTGTGGCTGCCCTGCTCCGGGCGCAGATGGCCGAGATCACGGGACCCGGGCGTTTTCCCAGCAGCTGAATCATTCCCACGAAAGCAAACATGGAGTCCCTCCAAAGCGGACTCGAAAAGAACAGCGATACTAGACACGGGTTTCACACAGTGACCGGCGGATCACACTCTGCGGCGACACAGCGAGGATAAACAGCGGCAGGACGCGGCCCGGGCGGAGGAATGCGCGCCGCACGGCCAGCACCGCCCAGACCCGGCGCCCCGGAGCGGCTCTGCGTTATTACACAACACAGCCCCCGCAACAGCCGCTACACACTGCTTATTCAGAGTAAGGATTATAGGCTAGCAGCCCAAGACACAACGACCCCCTCCATTGCCGcctattagtattagtattagtattattattattattattattagtagtattagtattattattatatgcccTCTTCCCCTCCCTCACTTACCACCTTCACCGCGACGCTCAGGACTGAGACGCGCTCCCCGGCCAGCAACTTTATACAGCTGTGCGCACCGCCGCGCCGC

Function

NR:

description
PREDICTED: cathepsin L1

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010142 False 2748 mRNA 0.44 7 16213578 16224041
TU97592 True 3432 lncRNA 0.46 6 16209319 16213933

Neighbor

gene id symbol gene type direction distance location
AMCG00010137 NA coding downstream 150132 16058513 ~ 16059187 (-)
AMCG00010130 NA coding downstream 279737 15920540 ~ 15929582 (-)
AMCG00010129 NA coding downstream 412241 15791118 ~ 15797078 (-)
AMCG00010132 NA coding downstream 473609 15720175 ~ 15735710 (-)
AMCG00010131 NA coding downstream 513493 15676288 ~ 15695826 (-)
AMCG00010143 fbp1b,LOC103033769,LOC107655925,LOC107596168,LOC108426201,LOC101486973 coding upstream 1130 16225171 ~ 16229672 (-)
AMCG00010147 NA coding upstream 428404 16652445 ~ 16663560 (-)
AMCG00010146 NA coding upstream 455204 16679245 ~ 16680222 (-)
AMCG00010148 NA coding upstream 471842 16695883 ~ 16696863 (-)
AMCG00010149 NA coding upstream 472826 16696867 ~ 16700248 (-)
G78190 NA non-coding downstream 176937 16032089 ~ 16032382 (-)
G78144 NA non-coding downstream 418323 15788763 ~ 15790996 (-)
G78099 NA non-coding downstream 566424 15642157 ~ 15642895 (-)
G78097 NA non-coding downstream 576111 15631648 ~ 15633208 (-)
G78014 NA non-coding downstream 1025925 15183112 ~ 15183394 (-)
G78226 NA non-coding upstream 8365 16232406 ~ 16236788 (-)
G78365 NA non-coding upstream 963978 17188019 ~ 17188849 (-)
G78422 NA non-coding upstream 1073401 17297442 ~ 17298204 (-)
G78428 NA non-coding upstream 1080939 17304980 ~ 17305651 (-)
G78429 NA non-coding upstream 1082336 17306377 ~ 17307001 (-)
AMCG00010082 NA other downstream 2739064 13347541 ~ 13470255 (-)
G77544 NA other downstream 4480154 11728503 ~ 11729165 (-)
AMCG00009989 NA other downstream 7887975 8314109 ~ 8321344 (-)
AMCG00009987 NA other downstream 8001992 8195735 ~ 8207327 (-)
AMCG00009962 NA other downstream 8919625 7284862 ~ 7289694 (-)
AMCG00010169 cnot6l,LOC107752360 other upstream 1058605 17282646 ~ 17295515 (-)
AMCG00010183 stoml2 other upstream 1249788 17473829 ~ 17478791 (-)
AMCG00010188 NA other upstream 1616666 17840707 ~ 17844389 (-)
AMCG00010190 NA other upstream 1628826 17852867 ~ 17855821 (-)
G78610 NA other upstream 1721194 17945235 ~ 17945761 (-)

Expression


Co-expression Network