AMCG00009987


Basic Information

Item Value
gene id AMCG00009987
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 8195735 ~ 8207327 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009987
TGCGCTGCCAGGCTAGTTATCAAGCCAGTGTTGGTCCTGGATTTGCTTCTGTAAGAGTTACTACAATAGTAACACCAAAAACGTAAAACATTATACGAGATGAAGCAGGAACTGCGGAAGTCAATTAACAAAAAGAACGAAAGCCCAAAAATGTCAACTAAAGATCAAAAGGCCATCATGGAATGCGCTGCGCACCTCAGGAAGATTGGAGACGTTTTCAACTTGAAATACAAGCTGATCGACATCTTGGCAAAGCATAATCATATGACTGTTCTCACCAAGAAGCTTCAGTTCCAAACTCCACCAGGCTTATTAGGACACAAGGACTTTTCACTACAACTGAACTGGGCCTTCAGAAACCGACTTGATGATATTCCAAACGTCGTAGTGCATGAGGCCCTGGAGAGATCGCCCGTTGATGGCCAGGAGCTCGTCCCCCACGGTTTGCCTGGGCAGCCGGGCCTGATGAAGCACAGCCAGAGCTTCTCCATGGGAGGTTCCAGCCAGGGAAGTCCCATTAAGGGCAATAATGTTATCCCCTCGATGAATGGTACCTTCCAGACCTGCTGCTCCTCTAGAGAACACACGGTGGACCTGtttgcaaaacacaagaaacacaaacgacaaaaaaaGGGTGACTTCAAGCTCTGTTTTGAAAGTGACATGGCCCGATTCACTGGAGAAGTCCTCGGTGCAAAGTTTGTCAAGATCAGGCATGCTCAGTGCTCTAAGTTCTCTCAGCCTGGAGCGAGACAAGCCAGAGTGGCCCCTGGGGTTTCGCTGTCTGGCTATGGGAGCTTAATAGAGCCATACTGGATGGAGATTTCCTCATATgcacagaggctgctgggccttcgcTCAGACTGTCAGCACAAGAGCTTAAACTCCTTCGTAAGGAACGGCAGCCATCCACCAAGTGGACACTTGCAGACG
>TU96115
ACGGTCTTAATTGGTATGTTTCACTTTTACGGAACAGGCTAAAGTGCCGTAAACTGTAAAAGGCCTCCCGGTTTAGGTTTCACTAGGTcatcacacaaaaacagcaaagcaGGAAGCGCAGCCGCGGCAGAGAATGTACTCTGTGACGTCAAGGGGACTCCCAGAGCCTCGCTGTCACAGCCGCCTATTTAATGCGCTGCCAGGCTAGTTATCAAGCCAGTGTTGGTCCTGGATTTGCTTCTGTAAGAGTTACTACAATAGTAACACCAAAAACGTAAAACATTATACGAGATGAAGCAGGAACTGCGGAAGTCAATTAACAAAAAGAACGAAAGCCCAAAAATGTCAACTAAAGATCAAAAGGCCATCATGGAATGCGCTGCGCACCTCAGGAAGATTGGAGACGTTTTCAACTTGAAATACAAGCTGATCGACATCTTGGCAAAGCATAATCATATGACTGTTCTCACCAAGAAGTGAAAGAGAAACGTGTCTGTTCTCGAATGTAAAATACATCCATCCATAAAAATGGGGAAACATAAAAGCCTTCGAAGCATTCAAACCCAGGTAACAATATTGGGAAACTAACCTGGGAGAATATTGTGGGACTTGACCATGTCGGGGAAGCACAGAGGACCCTCTACTGCGGGAGGTCTTCACATGTTGCCATGCAGCGGCTGGCATCAGCAAAGTGCCCATGAATTGAATGGGTGTCCATTCCCTGTGAAGGGGCTTTATCCTGCTGTCCATGTGGTCCTGAGAAGAGGATGAAAGTCCAGGAGCCCGAGATGGGAAAAGGTCGGCTTCTTTCCCTTTCAGTTTCAGGACACAAACGGGACGTGCCTTTAATCCGTTTTTGCTTAATCAGATCAGCAACGATGGACAGGGTTTGGACAGTCAGATTGTCAACACCATTTGctattttaatctaattttatttaattgtattttaaatgtatgaaataattatttaaatagatcCCATGCCAGTCTGACCAAGAGAGCAACgcttttatttgcattaaatccattaataataatacagaacaatgccatacaatattttatgttttatgtttttacactGTAGGGAAACATTACCTGAAATAGAAACGCACTGTATTTACTTTGTACTGATAAGGGAGCCTTAACTACAGTATGTTTACAAAGTTTTAATGtggtttattaatttgaaaactttCAGAGCTTTCCTGAAAagtgttttctgctgttttgtaagtttattattattattattattattattattattattattattatataaattcttattttttcaagtaAAGCAGTAAGTGTTGGTTTATATTTCAAAACGTATGTGAACGGATAATAAAGTTGACTGTAGAATTTATTACTAAGCACACACAGGAACAAGAATGTAGTtcttttgtactttattttaaacagagttcagtctgttatttgattattttcagtTGCCGAAATGTActtctggtttgttttcttctggatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009987 False 933 mRNA 0.49 7 8195735 8207135
TU96115 True 1498 lncRNA 0.38 2 8205592 8207327

Neighbor

gene id symbol gene type direction distance location
AMCG00009981 sub1,tcp4,LOC106568402 coding downstream 196186 7995588 ~ 7999549 (-)
AMCG00009978 LOC105901092 coding downstream 448157 7740664 ~ 7747578 (-)
AMCG00009977 NA coding downstream 495925 7690903 ~ 7699810 (-)
AMCG00009975 NA coding downstream 524773 7661052 ~ 7670962 (-)
AMCG00009974 vcp,LOC107708640,LOC103357444 coding downstream 539559 7644800 ~ 7656176 (-)
AMCG00009994 NA coding upstream 546300 8753627 ~ 8760035 (-)
AMCG00010001 arl15b,LOC107713334,LOC108433533,LOC107595536 coding upstream 630778 8838105 ~ 8943715 (-)
AMCG00010000 NA coding upstream 824795 9032122 ~ 9057862 (-)
AMCG00010004 tmem175,LOC107744870 coding upstream 998229 9205556 ~ 9216688 (-)
AMCG00010008 NA coding upstream 1212537 9419864 ~ 9425212 (-)
G76959 NA non-coding downstream 165828 8021115 ~ 8029907 (-)
G76937 NA non-coding downstream 301345 7834671 ~ 7894390 (-)
G76833 NA non-coding downstream 760188 7434691 ~ 7435547 (-)
G76768 NA non-coding downstream 1065637 7129880 ~ 7130098 (-)
G76761 NA non-coding downstream 1138766 7056706 ~ 7056969 (-)
G77050 NA non-coding upstream 490351 8697678 ~ 8700141 (-)
G77163 NA non-coding upstream 996063 9203390 ~ 9204115 (-)
G77172 NA non-coding upstream 1044931 9252258 ~ 9252590 (-)
G77183 NA non-coding upstream 1168852 9376179 ~ 9378011 (-)
G77193 NA non-coding upstream 1209117 9416444 ~ 9419356 (-)
AMCG00009962 NA other downstream 906041 7284862 ~ 7289694 (-)
G76762 NA other downstream 1132914 7057805 ~ 7062821 (-)
G76752 LOC101154678 other downstream 1258667 6936718 ~ 6937068 (-)
G76684 NA other downstream 1525609 6666606 ~ 6670126 (-)
G76463 NA other downstream 2294751 5894675 ~ 5900984 (-)
AMCG00009989 NA other upstream 106782 8314109 ~ 8321344 (-)
G77544 NA other upstream 3521176 11728503 ~ 11729165 (-)
AMCG00010082 NA other upstream 5140214 13347541 ~ 13470255 (-)
AMCG00010142 LOC104932682,LOC108255669 other upstream 8001992 16209319 ~ 16224041 (-)
AMCG00010169 cnot6l,LOC107752360 other upstream 9075319 17282646 ~ 17295515 (-)

Expression


Co-expression Network