AMCG00010082


Basic Information

Item Value
gene id AMCG00010082
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 13347541 ~ 13470255 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010082
ATGGCCGTGCTGCCgaggctggggggggggtaCTTTGCacaaaggggggtgggggcggggtgCTCTGCGCAAAGGGAGGTGGGGTGCTCTGTgcaaaggggggtgggggcggggtgCTTTGTGCAACAGGGCGTGGTGGGGGGGCGGAGGAGGCAGCAGCCGGGGCAGCAAGGATTTGACAACATCCTAAACGGAATGGCCTCGATGAAAGGCTCCCTTCTTGCACACAACAGCTGTCTTGATGGAACGAACTGTCAAAATTCACAACCTGTTTATGATTCATGGGCTGACCACCCAGACAAACCGCTcggagaaggggaaaaaaaatcactggaGAAACGGATACTGCACAATAGATCAGAGACATCCCAGAcagaagaggaggatggaggGGTGAAAGAGGAAACTGTTCTCACACTGACTGAGAGGTTGATTACTGCTGTACTGCCATCACACCTCACTGAGCCACGTAATGCTGAAAAGATGAAAGaacaaataagTTCGAATCCTTGGAACGCTAGCTACTGCCAGACCCTCGGGTTCATTCGTCATTCTCGGGAGTACTGCTCCAGATTAACTATGGCCATCTACCATTCCTCTGGGCACCCCGAGAGGCAATCTCTTTTACGGATATTGCACATTTCCTGTAAGACTAAAAGCACAAAAAAGGTAAACTCCTGCTCCTACTTACTCCATCCAAGCAGAGGTGCCAGACTCCATGCCAGTGAGTACAACCAAACCAGGAAGATCACCACATACGTGCGCTGTCTAGATGTCCACCGATTGACTGGTAAGAGCAGACTAGAAGAAGTCACAGCAGATGCCATTGTGGACACTCTGAATGACTTCACACTTTTGATCCCATGGAATGAGCAGGACAAGGCTCTGAAAAAAAATATGATTGATGATCTATTTGACAACCAAGCCCCAGTATTGTTGCAGATCTTGGAAGACGGATTGAAAGACAAGCAGTGGTTTGTTGGAGATTCAGTTACCTGGGCAGACCTCTACTGGCACATTTGTTTCACAACCTTCAATGTTCTGAGGGAAGGCTTTGCGGATCCGTACCCTAGACTAAAAAGTCTGAAAGACAGAGTGGGAAACATACCTGAAATAGcagaatggattaaaaaaaggcCGTGTACAGAATTTTAA
>TU97071
GTGGCATGCAATTCTTGTCCAGATTGATTTGTAGTTTTTATACTGATGgatcacatttgtattattattaaggggGGACAGTGAACTTAATTATCATGTTACTAGTTGTGGTATAACAGTTAAAGGTTTTAAAGCTGGATGTGTGGTTTGCAGGATTGACTGGTAAGAGCAGACTAGAAGAAGTCACAGCAGATGCCATTGTGGACACTCTGAATGACTTCACACTTTTGATCCCATGGAATGAGCAGGACAAGGCTCTGAAAAAAAATATGATTGATGATCTATTTGACAACCAAGCCCCAGTATTGTTGCAGATCTTGGAAGACGGATTGAAAGACAAGCAGTGGTTTGTTGGAGATTCAGTTACCTGGGCAGACCTCTACTGGCACATTTGTTTCACAACCTTCAATGTTCTGAGGGAAGGCTTTGCGGATCCGTACCCTAGACTAAAAAGTCTGAAAGACAGAGTGGGAAACATACCTGAAATAGcagaatggattaaaaaaaggcCGTGTACAGAATTTTAACCATTTCTGCATTAATGCTAAAACACTGACAAGGAAGAACTGTGTTGAAATGGATTGTATGTAGTTGAAgaggaatgtcagtgttttttttttgtttttaaagtttagCAGTTGATCCTTGATTCAATATTTAAGCCATTTTCTATTCAACTTATTAAATGGATGTTATGCA

Function

GO: NA

KEGG:

id description
K04097 HPGDS; prostaglandin-H2 D-isomerase / glutathione transferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010082 True 1155 mRNA 0.49 12 13347713 13470255
TU97071 False 699 lncRNA 0.38 3 13347541 13349192

Neighbor

gene id symbol gene type direction distance location
AMCG00010076 NA coding downstream 878859 12465333 ~ 12468682 (-)
AMCG00010069 NA coding downstream 1002197 12339260 ~ 12345344 (-)
AMCG00010070 LOC103390388 coding downstream 1066650 12208986 ~ 12280891 (-)
AMCG00010066 NA coding downstream 1139549 12161014 ~ 12207992 (-)
AMCG00010065 NA coding downstream 1216352 12124048 ~ 12131189 (-)
AMCG00010088 NA coding upstream 108461 13578716 ~ 13635400 (-)
AMCG00010091 LOC108435138,LOC105014579,LOC106585820 coding upstream 172833 13643088 ~ 13675666 (-)
AMCG00010090 LOC105901120,LOC105014579,LOC107558977 coding upstream 233142 13703397 ~ 13712371 (-)
AMCG00010092 NA coding upstream 790484 14260739 ~ 14279927 (-)
AMCG00010097 zbtb7c,LOC106568492,LOC106561213 coding upstream 1069648 14539903 ~ 14546114 (-)
G77760 NA non-coding downstream 625932 12718883 ~ 12721609 (-)
G77758 NA non-coding downstream 803901 12543435 ~ 12543640 (-)
G77755 NA non-coding downstream 833620 12462963 ~ 12513921 (-)
G77738 NA non-coding downstream 889422 12432913 ~ 12458119 (-)
G77713 NA non-coding downstream 987974 12358327 ~ 12359567 (-)
G77852 NA non-coding upstream 701056 14171311 ~ 14171582 (-)
G77878 NA non-coding upstream 937363 14407618 ~ 14407820 (-)
G77887 NA non-coding upstream 971361 14441616 ~ 14446141 (-)
G77896 NA non-coding upstream 1035183 14505438 ~ 14511946 (-)
G77895 NA non-coding upstream 1043673 14513928 ~ 14519622 (-)
G77544 NA other downstream 1618376 11728503 ~ 11729165 (-)
AMCG00009989 NA other downstream 5026197 8314109 ~ 8321344 (-)
AMCG00009987 NA other downstream 5140214 8195735 ~ 8207327 (-)
AMCG00009962 NA other downstream 6057847 7284862 ~ 7289694 (-)
G76762 NA other downstream 6284720 7057805 ~ 7062821 (-)
AMCG00010142 LOC104932682,LOC108255669 other upstream 2739064 16209319 ~ 16224041 (-)
AMCG00010169 cnot6l,LOC107752360 other upstream 3812391 17282646 ~ 17295515 (-)
AMCG00010183 stoml2 other upstream 4003574 17473829 ~ 17478791 (-)
AMCG00010188 NA other upstream 4370452 17840707 ~ 17844389 (-)
AMCG00010190 NA other upstream 4382612 17852867 ~ 17855821 (-)

Expression


Co-expression Network