AMCG00010190


Basic Information

Item Value
gene id AMCG00010190
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17852867 ~ 17855821 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010190
CTCAGTCTTATTACCTGTAACAGATTGTAAACTGACAGATATGCCCTAGggagtttttaaaaaaaggatacaGGTTAGTTTCCAGGACGAACTTTGGCAACATTCCCAGCTGGAAAAACGAAACTTACTAAGAGTATATATTCAGGCACTTATCCCCATACTGCTGCATACCTGCTCTGAACTCCTCCAAGGCTCCTAACTAAGAAAGCATGAACATAATGGCTGTGAAAGCTGTAGCTCTCCTCCTGGTCGCCTCTGTTCTCTGGAACTACGCAGAAGCAAGCTATGAAGGAGCTTTTGACTGCTGCTTGTCTACTAAAAGCCAGATTATCCCAAGACGTATCGTCAAGTCCTACAGCACACAGACAGCTCGGGAAGGCTGCATGATACCTGCAGTCTTATTCAAGGTTAAAAAGGGTATGACGCTGTGTGCCCCACCTGATGCCCAATGGGTGAAACAACTGATGACATTTCTGGACAAGAAAACCAGCAAACCAACTacacagaggaagagaaagcCAACGAGGAGGAGGGGGAAGAAGTACTGAGACAAGTCAAGGGCTGATTCAGCATTAGATTGGGTTTCTTCCAACACCGGACTGAGAAGCGTACACAACGGAAACGAAGGGCCAACAAAAGCTTTCCAGCTTTAGGCCACTTGACATTGCTCTGCATTGTGAAAAATAGGAGCTAGAGACCTTTCTAACTGCAGGATGGGATCAATTAGTAAAGAAGTCCACTTTGTAAAAACTGCATTAGAACTGTCTACTCACAAATCTTGTCGAGATGAGTTTTGACATTCAAAGGGAATGTAGCTCTCCTTTCTACTTAGtctttctccttttctgtttttctgttggtttataataacaataataataataagaagaagaagaagaagaagaagaagaagaacagaaaCAACTACAAATAACCCTCTATGTGGAGTTTATGtcataaactgaaaaaagtgaTATCTCAGaatctgtttaattttcattacgTTATTACATTGCTATTTGTATAGAACATAGCAGAATCTatatacatttgcacattttgtaatAAGCTATTCTTTGaatatgtatgaatgttttGTGTCCATTGTTTCACACTTAAAGTGCGCCTAAATGTGATGACTGgtttataataaaaagaaaaagaaaatca
>TU98067
CTTTGGCAACATTCCCAGCTGGAAAAACGAAACTTACTAAGAGTATATATTCAGGCACTTATCCCCATACTGCTGCATACCTGCTCTGAACTCCTCCAAGGCTCCTAACTAAGAAAGCATGAACATAATGGCTGTGAAAGCTGTAGCTCTCCTCCTGGTCGCCTCTGTTCTCTGGAACTACGCAGAAGCAAGCTATGAAGGAGCTTTTGACTGCTGCTTGTCTACTAAAAGCCAGATTATCCCAAGACGTATCGTCAAGTCCTACAGCACACAGACAGCTCGGGAAGGCTGCATGATACCTGCAGTCTTATTCAAGGTTAAAAAGGGTATGACGCTGTGTGCCCCACCTGATGCCCAATGGGTGAAACAACTGATGACATTTCTGGACAAGAAAACCAGCAAACCAACTacacagaggaagagaaagcCAACGAGGAGGAGGGGGAAGAAGTACTGAGACAAGTCAAGGGCTGATTCAGCATTAGATTGGGTTTCTTCCAACACCGGACTGAGAAGCGTACACAACGGAAACGAAGGGCCAACAAAAGCTTTCCAGCTTTAGGCCACTTGACATTGCTCTGCATTGTGAAAAATAGGAGCTAGAGACCTTTCTAACTGCAGGATGGGATCAATTAGTAAAGAAGTCCACTTTGTAAAAACTGCATTAGAACTGTCTACTCACAAATCTTGTCGAGATGAGTTTTGACATTCAAAGGGAATGTAGCTCTCCTTTCTACTTAGtctttctccttttctgtttttctgttggtttataataacaataataataataagaagaagaagaagaagaagaagaagaagaacagaaaCAACTACAAATAACCCTCTATGTGGAGTTTATGtcataaactgaaaaaagtgaTATCTCAGaatctgtttaattttcattacgTTATTACATTGCTATTTGTATAGAACATAGCAGAATCTatatacatttgcacattttgtaatAAGCTATTCTTTGaatatgtatgaatgttttGTGTCCATTGTTTCACACTTAAAGTGCGCCTAAATGTGATGACTGgtttataataaaaagaaaaagaaaatcacccGGTGTGCACCATCATGTTTGATT

Function

GO: NA

KEGG:

id description
K16062 CCL21, SLC; C-C motif chemokine 21

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010190 True 1170 mRNA 0.39 4 17852893 17855821
TU98067 False 1105 TUCP 0.40 4 17852867 17855730

Neighbor

gene id symbol gene type direction distance location
AMCG00010189 NA coding downstream 27375 17822669 ~ 17825492 (-)
AMCG00010181 fam214b,LOC103397924 coding downstream 359079 17483505 ~ 17493788 (-)
AMCG00010182 NA coding downstream 379259 17465112 ~ 17473608 (-)
AMCG00010180 NA coding downstream 400379 17440183 ~ 17452488 (-)
AMCG00010178 NA coding downstream 449360 17395137 ~ 17403507 (-)
AMCG00010195 NA coding upstream 219111 18074932 ~ 18111982 (-)
AMCG00010196 NA coding upstream 259693 18115514 ~ 18126029 (-)
AMCG00010205 NA coding upstream 968584 18824405 ~ 18850929 (-)
AMCG00010209 LOC103366656,LOC100696291,LOC101467343,LOC102289343 coding upstream 1027589 18883410 ~ 18903519 (-)
AMCG00010208 NA coding upstream 1065468 18921289 ~ 18924380 (-)
G78600 NA non-coding downstream 31695 17817560 ~ 17821172 (-)
G78511 NA non-coding downstream 388304 17464226 ~ 17464563 (-)
G78510 NA non-coding downstream 388849 17463477 ~ 17464018 (-)
G78509 NA non-coding downstream 392363 17458889 ~ 17460504 (-)
G78508 NA non-coding downstream 394394 17457944 ~ 17458473 (-)
G78609 NA non-coding upstream 80301 17936122 ~ 17936577 (-)
G78614 NA non-coding upstream 113348 17969169 ~ 17969368 (-)
G78615 NA non-coding upstream 113819 17969640 ~ 17969841 (-)
G78616 NA non-coding upstream 117682 17973503 ~ 17976065 (-)
G78661 NA non-coding upstream 321756 18177577 ~ 18183301 (-)
AMCG00010188 NA other downstream 8478 17840707 ~ 17844389 (-)
AMCG00010183 stoml2 other downstream 374076 17473829 ~ 17478791 (-)
AMCG00010169 cnot6l,LOC107752360 other downstream 557352 17282646 ~ 17295515 (-)
AMCG00010142 LOC104932682,LOC108255669 other downstream 1628826 16209319 ~ 16224041 (-)
AMCG00010082 NA other downstream 4382612 13347541 ~ 13470255 (-)
G78610 NA other upstream 89414 17945235 ~ 17945761 (-)
AMCG00010206 NA other upstream 1007447 18863268 ~ 18872082 (-)
AMCG00010234 hint2,LOC106585387,LOC107720264,LOC103469931 other upstream 2332837 20188658 ~ 20195384 (-)
G79147 cplx4,cplx4a,LOC107662952,LOC107719084,LOC107739741 other upstream 3075350 20931171 ~ 20941393 (-)
AMCG00010247 NA other upstream 3197803 21053624 ~ 21081825 (-)

Expression


Co-expression Network