G78600


Basic Information

Item Value
gene id G78600
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17817560 ~ 17821172 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU98061
TTCACATGAGCACCTTGTTATTAATATCCATCTGAAATTAATAATGCCATACACATTATATAGCATGGATAAAAGAAGACATTAGTGTCACTTGGAATATGTACAAGCAGGAGATATAATActaacagacagaaaaaaagagaagaaaatacatgtacatatatacccACCACTCCCTTTTACAGACTGGTTTTCCTGAAGCTCAAACATCAAGCGGTTAAGAAGGATTCAGCTTGTGTGTGCAGGTCTAGGCAGTGCAGACAACTCCACAGAACTGTTCTCCCAAAAGGCACCAATactgtctctccccctccttcaAATACTGCCTGTCATGTCTGCCAAGAATGTAAATGGAAAGCAAGGCTGCCTGGGAAGAATTCTGGAACCTCCATCCACGGAATTCAGACGGGTTCCGAGTTGCGACCCCAACCCccaataatattaaattggtaCCATCCCCCATTTTGTGACCAAAACCCTCAGCTGCAGGAAATCCGCTCTCTACAGCCGCTTTAAACGAACCTATAAAACAGGTACAGGACATTTTCAGCGACCCAGCTGCCCTACTCTATCAAATAGGAAAATATACTCTATTCACCCTTTATTCTAAAAACACgttaaacaaaaaggaaaactgtgTGACACCTCGTACAATTCTCTCATGGGTGGAAATTAACGTGGTATTAAATTAAGAAtatttacaacttccaattaaataaaaagtgcaattggcttaaatatatgtatatatagaaacaaatcaaagaagaaatataaagccttaattataaaaaaaaaagtgaaatcacAGTGGTGTAACTGAGCTGGAGAGCCTGCCTTATCCAGTGTACCTTTAGCTACAATGTAGCCTTTTCAATTCAGTCAACCAAGTTTAAAGACCAAGGCTTTTATAGGCCTGTCATTAATACAGCCAACTGCTGAAAGGCAatgaaaccaaaaccaaaaacccCACATTCTCCGTCCACTAACCATTCCCAACCAACCCTTTTCTATCTATCAATCACATTCCATACTTTGAACACCTCCCTCATAAAACCTGCTAAATCCCATCAGTGTTTTCTCTAGAATCCCTTATTTACCTGATGTGTTGAAGCGTTTGTACcattaacacacacaatttgGAAGTTTCTTCATCTCAAGACGTTCACTGGACACATCGAAATTTTAAGGCCACATTACAATCTGAATTGTCCCCACGATGTGGCACTAGTGCACACTTCAggtacacatttataaagacaaTGCACCTGGTTGGGTAAGTGTTTTGGCACCTAAAGATATGGCACCTCtgctatacatttttatacaggACAAATCAGGAATAAAGTCTTCCAATTAAGGTGAATGAGGAACAAATGtgcaaacttaaataaataaaaacaattttatacGTGTACTTGACAGCTGGTGGTGAACACACTAAGTGTTCCATGCCATTTCACTCGGAAATTAATCTGTGCCTCTTGAACAGAAGCTGAAACTGTAGGATCAGTGAACGTGTTATACTTTTGCCACCCTGTTCCAGACCACAAACCTAAACACACCTGTGAGGGTCCTACGCAGAACTTGTGGTGTCCTGCCACTAGCCACTGGTGTGGAGAGAAGTCAGAGCATCGATCTTCCCTCGGTCATGCCTCCCCTGGGCTCACCTGCTTTCCTTTACATCCTCAACTTTGTTACTGCACGTCACTATGCAGCTATACACTACCCGGAATAAGTTACATCagtacttcataaataaattaaatgcaacacatattatttatatagattCTTGTATTTATCCTCTCCAGTCCCCGCACCTATGCCGTGTCCAAAGTCCATCGAATAAATGCActgggaggagggagggagggatggggggcATTTGAAGGGTGCAATGTTTGCTATGGGGACACATGCACAGACTCCAGTGCCACCAGGGCCCTCCCCTGCCCAGAGCCAGTCAGCCACCTCCTCCACCCGTGGTCCAAACGGGGTGGAGTCTGTGAGCGGACGCTGGCCAGTCAAGTCCGTTTCTAATCGCCGTAGAAAAGTTCAAGATAACGTTCGTACGGCCAACGTAAGGCGGCTTTTTCGTCTTCCCGACCGAAACCCACTTGTGTGATTGTTCTCATCAACGACTTGGAAAACAGAAAACGTTGGAACTTCCGCAGGGTTTACATATGGCTTAACAATAAGGGGTTTTAATAGAGCATGATTAAACCAGAGGCAAGTCCACATTTTAGAGCAGTTGTTCAATGCTGTTTTAAGGCCAATCTTCACTTTACACATTGACTCAGCTTTAAATAATCCGCATTAAAACCcctcataaatatgtattgttagtTCTAGATTGAAAACTCTACCttgtaatactttattttgtattcgtCCCCCATTGACAGGAAAGGAATAAAgcgtgaacacacacacacagggtaaCTACGGTTAAGAAACTGtgtcaaaacaaaaacgaaTGAGCTCAGCTAAAAAGGTACCAGATACCTGTAAAAtcctctgaaatgtgcagtgaTGTGACTTCCCTTAAGAGTACAATTAAACGGTCAATGTAACTGTGATTCCGGATTGTGCCGTGTGCTTTGGGTCTGGTTTGGTGAATTCGACGTGAGCGACTCATGTTTTACGGAGAAGTTGCTTGTAGTGAATTCGATTAGCAAAGTGTGTTTTCAACTGTAAGGGACGTAGGATGCATCTCATTTCGACGAACAAACCTTCACTCCATGTTATTTTTCACCTCATGCGAGGACATTATAGATGATACACTTGGGTGTATAGCAGATGTACCGAAAGAAAGCATTTTGTTAGAAAAGTGCCATGCTTAGTATTGTCCCTTATAGAATGTGTCCCTATTTCCTGTCCTCTGTCCCGTCCCATGCTGCACATGTCAAAGGACTTTACAGGCCTCTTTTTGAAGATGATGAACAAGTTTAGTTTCCTTTGTGACACTCCTTCTATCTTCCGCCTTAAGATACACACAGATTGGATATAGGTATAGGTATAGATATAGATTGACGGATATAGCAGAAAGTATCGTTAACTGTTTAATGACCTGGAGTCAGTCTGTAGATGCCGAGTTCCAGTGCTCCCTacgcactgtgtgtgtgtgtgtgtgtgtgtgtttgtctgtgcgagtgtgtgtgcgcgtgtgtgagGTTGTGAGTGTTTTCCAGTGGTCGGTGGCCAGAGAAGAGGGTTTGCGTCTggtgggtggggaggggggtgttgtTATCTAGGCCCCTCTCTGACCCCAGTCCACCCCACAAGCCTCCTGGGTGGTTCAGTTGCCATGCGACTCCTCGGTCAGGGTGACGTAGATGATGGGCACCAGGCCGGAGCTGTGCCCCAGGGCGCAGTACAGCCAGTCGGGTTCGGCTCGGCTCAGCACCCTCAGCACGTCGCCCTTCTTGAAGCTGAGGTGGCCCGGCTCCGTGGCAATGTGGTGGCACAGCGTCCGCACCTCCCTGTGGGGGGCGAAGACAGGAGGGACGACACTGAGACACGCATCACATGGTCAGACACAACCGTGCCGGCCTCACCAAACAGCAGTCCAACACACTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU98061 True 3583 lncRNA 0.44 2 17817560 17821172

Neighbor

gene id symbol gene type direction distance location
AMCG00010181 fam214b,LOC103397924 coding downstream 323772 17483505 ~ 17493788 (-)
AMCG00010182 NA coding downstream 343952 17465112 ~ 17473608 (-)
AMCG00010180 NA coding downstream 365072 17440183 ~ 17452488 (-)
AMCG00010178 NA coding downstream 414053 17395137 ~ 17403507 (-)
AMCG00010179 NA coding downstream 429504 17380188 ~ 17388056 (-)
AMCG00010189 NA coding upstream 1497 17822669 ~ 17825492 (-)
AMCG00010195 NA coding upstream 253760 18074932 ~ 18111982 (-)
AMCG00010196 NA coding upstream 294342 18115514 ~ 18126029 (-)
AMCG00010205 NA coding upstream 1003233 18824405 ~ 18850929 (-)
AMCG00010209 LOC103366656,LOC100696291,LOC101467343,LOC102289343 coding upstream 1062238 18883410 ~ 18903519 (-)
G78511 NA non-coding downstream 352997 17464226 ~ 17464563 (-)
G78510 NA non-coding downstream 353542 17463477 ~ 17464018 (-)
G78509 NA non-coding downstream 357056 17458889 ~ 17460504 (-)
G78508 NA non-coding downstream 359087 17457944 ~ 17458473 (-)
G78470 NA non-coding downstream 409361 17407991 ~ 17408199 (-)
G78609 NA non-coding upstream 114950 17936122 ~ 17936577 (-)
G78614 NA non-coding upstream 147997 17969169 ~ 17969368 (-)
G78615 NA non-coding upstream 148468 17969640 ~ 17969841 (-)
G78616 NA non-coding upstream 152331 17973503 ~ 17976065 (-)
G78661 NA non-coding upstream 356405 18177577 ~ 18183301 (-)
AMCG00010183 stoml2 other downstream 338769 17473829 ~ 17478791 (-)
AMCG00010169 cnot6l,LOC107752360 other downstream 522045 17282646 ~ 17295515 (-)
AMCG00010142 LOC104932682,LOC108255669 other downstream 1593519 16209319 ~ 16224041 (-)
AMCG00010082 NA other downstream 4347305 13347541 ~ 13470255 (-)
G77544 NA other downstream 6088395 11728503 ~ 11729165 (-)
AMCG00010188 NA other upstream 19535 17840707 ~ 17844389 (-)
AMCG00010190 NA other upstream 31695 17852867 ~ 17855821 (-)
G78610 NA other upstream 124063 17945235 ~ 17945761 (-)
AMCG00010206 NA other upstream 1042096 18863268 ~ 18872082 (-)
AMCG00010234 hint2,LOC106585387,LOC107720264,LOC103469931 other upstream 2367486 20188658 ~ 20195384 (-)

Expression


Co-expression Network