RNA id: TU98061


Basic Information

Item Value
RNA id TU98061
length 3583
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G78600
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17817560 ~ 17821172 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCACATGAGCACCTTGTTATTAATATCCATCTGAAATTAATAATGCCATACACATTATATAGCATGGATAAAAGAAGACATTAGTGTCACTTGGAATATGTACAAGCAGGAGATATAATActaacagacagaaaaaaagagaagaaaatacatgtacatatatacccACCACTCCCTTTTACAGACTGGTTTTCCTGAAGCTCAAACATCAAGCGGTTAAGAAGGATTCAGCTTGTGTGTGCAGGTCTAGGCAGTGCAGACAACTCCACAGAACTGTTCTCCCAAAAGGCACCAATactgtctctccccctccttcaAATACTGCCTGTCATGTCTGCCAAGAATGTAAATGGAAAGCAAGGCTGCCTGGGAAGAATTCTGGAACCTCCATCCACGGAATTCAGACGGGTTCCGAGTTGCGACCCCAACCCccaataatattaaattggtaCCATCCCCCATTTTGTGACCAAAACCCTCAGCTGCAGGAAATCCGCTCTCTACAGCCGCTTTAAACGAACCTATAAAACAGGTACAGGACATTTTCAGCGACCCAGCTGCCCTACTCTATCAAATAGGAAAATATACTCTATTCACCCTTTATTCTAAAAACACgttaaacaaaaaggaaaactgtgTGACACCTCGTACAATTCTCTCATGGGTGGAAATTAACGTGGTATTAAATTAAGAAtatttacaacttccaattaaataaaaagtgcaattggcttaaatatatgtatatatagaaacaaatcaaagaagaaatataaagccttaattataaaaaaaaaagtgaaatcacAGTGGTGTAACTGAGCTGGAGAGCCTGCCTTATCCAGTGTACCTTTAGCTACAATGTAGCCTTTTCAATTCAGTCAACCAAGTTTAAAGACCAAGGCTTTTATAGGCCTGTCATTAATACAGCCAACTGCTGAAAGGCAatgaaaccaaaaccaaaaacccCACATTCTCCGTCCACTAACCATTCCCAACCAACCCTTTTCTATCTATCAATCACATTCCATACTTTGAACACCTCCCTCATAAAACCTGCTAAATCCCATCAGTGTTTTCTCTAGAATCCCTTATTTACCTGATGTGTTGAAGCGTTTGTACcattaacacacacaatttgGAAGTTTCTTCATCTCAAGACGTTCACTGGACACATCGAAATTTTAAGGCCACATTACAATCTGAATTGTCCCCACGATGTGGCACTAGTGCACACTTCAggtacacatttataaagacaaTGCACCTGGTTGGGTAAGTGTTTTGGCACCTAAAGATATGGCACCTCtgctatacatttttatacaggACAAATCAGGAATAAAGTCTTCCAATTAAGGTGAATGAGGAACAAATGtgcaaacttaaataaataaaaacaattttatacGTGTACTTGACAGCTGGTGGTGAACACACTAAGTGTTCCATGCCATTTCACTCGGAAATTAATCTGTGCCTCTTGAACAGAAGCTGAAACTGTAGGATCAGTGAACGTGTTATACTTTTGCCACCCTGTTCCAGACCACAAACCTAAACACACCTGTGAGGGTCCTACGCAGAACTTGTGGTGTCCTGCCACTAGCCACTGGTGTGGAGAGAAGTCAGAGCATCGATCTTCCCTCGGTCATGCCTCCCCTGGGCTCACCTGCTTTCCTTTACATCCTCAACTTTGTTACTGCACGTCACTATGCAGCTATACACTACCCGGAATAAGTTACATCagtacttcataaataaattaaatgcaacacatattatttatatagattCTTGTATTTATCCTCTCCAGTCCCCGCACCTATGCCGTGTCCAAAGTCCATCGAATAAATGCActgggaggagggagggagggatggggggcATTTGAAGGGTGCAATGTTTGCTATGGGGACACATGCACAGACTCCAGTGCCACCAGGGCCCTCCCCTGCCCAGAGCCAGTCAGCCACCTCCTCCACCCGTGGTCCAAACGGGGTGGAGTCTGTGAGCGGACGCTGGCCAGTCAAGTCCGTTTCTAATCGCCGTAGAAAAGTTCAAGATAACGTTCGTACGGCCAACGTAAGGCGGCTTTTTCGTCTTCCCGACCGAAACCCACTTGTGTGATTGTTCTCATCAACGACTTGGAAAACAGAAAACGTTGGAACTTCCGCAGGGTTTACATATGGCTTAACAATAAGGGGTTTTAATAGAGCATGATTAAACCAGAGGCAAGTCCACATTTTAGAGCAGTTGTTCAATGCTGTTTTAAGGCCAATCTTCACTTTACACATTGACTCAGCTTTAAATAATCCGCATTAAAACCcctcataaatatgtattgttagtTCTAGATTGAAAACTCTACCttgtaatactttattttgtattcgtCCCCCATTGACAGGAAAGGAATAAAgcgtgaacacacacacacagggtaaCTACGGTTAAGAAACTGtgtcaaaacaaaaacgaaTGAGCTCAGCTAAAAAGGTACCAGATACCTGTAAAAtcctctgaaatgtgcagtgaTGTGACTTCCCTTAAGAGTACAATTAAACGGTCAATGTAACTGTGATTCCGGATTGTGCCGTGTGCTTTGGGTCTGGTTTGGTGAATTCGACGTGAGCGACTCATGTTTTACGGAGAAGTTGCTTGTAGTGAATTCGATTAGCAAAGTGTGTTTTCAACTGTAAGGGACGTAGGATGCATCTCATTTCGACGAACAAACCTTCACTCCATGTTATTTTTCACCTCATGCGAGGACATTATAGATGATACACTTGGGTGTATAGCAGATGTACCGAAAGAAAGCATTTTGTTAGAAAAGTGCCATGCTTAGTATTGTCCCTTATAGAATGTGTCCCTATTTCCTGTCCTCTGTCCCGTCCCATGCTGCACATGTCAAAGGACTTTACAGGCCTCTTTTTGAAGATGATGAACAAGTTTAGTTTCCTTTGTGACACTCCTTCTATCTTCCGCCTTAAGATACACACAGATTGGATATAGGTATAGGTATAGATATAGATTGACGGATATAGCAGAAAGTATCGTTAACTGTTTAATGACCTGGAGTCAGTCTGTAGATGCCGAGTTCCAGTGCTCCCTacgcactgtgtgtgtgtgtgtgtgtgtgtgtttgtctgtgcgagtgtgtgtgcgcgtgtgtgagGTTGTGAGTGTTTTCCAGTGGTCGGTGGCCAGAGAAGAGGGTTTGCGTCTggtgggtggggaggggggtgttgtTATCTAGGCCCCTCTCTGACCCCAGTCCACCCCACAAGCCTCCTGGGTGGTTCAGTTGCCATGCGACTCCTCGGTCAGGGTGACGTAGATGATGGGCACCAGGCCGGAGCTGTGCCCCAGGGCGCAGTACAGCCAGTCGGGTTCGGCTCGGCTCAGCACCCTCAGCACGTCGCCCTTCTTGAAGCTGAGGTGGCCCGGCTCCGTGGCAATGTGGTGGCACAGCGTCCGCACCTCCCTGTGGGGGGCGAAGACAGGAGGGACGACACTGAGACACGCATCACATGGTCAGACACAACCGTGCCGGCCTCACCAAACAGCAGTCCAACACACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97957 lncRNA downstream 343429 17473829 ~ 17474131 (-) False AMCG00010183
TU97949 lncRNA downstream 352997 17464226 ~ 17464563 (-) True G78511
TU97948 lncRNA downstream 353542 17463477 ~ 17464018 (-) True G78510
TU97947 lncRNA downstream 357056 17458889 ~ 17460504 (-) True G78509
TU97945 lncRNA downstream 359087 17457944 ~ 17458473 (-) True G78508
TU98071 lncRNA upstream 114950 17936122 ~ 17936577 (-) True G78609
TU98076 lncRNA upstream 147997 17969169 ~ 17969368 (-) True G78614
TU98077 lncRNA upstream 148468 17969640 ~ 17969841 (-) True G78615
TU98078 lncRNA upstream 152331 17973503 ~ 17976065 (-) True G78616
TU98132 lncRNA upstream 356405 18177577 ~ 18183301 (-) True G78661
AMCG00010181 mRNA downstream 323772 17483505 ~ 17493788 (-) True AMCG00010181
AMCG00010183 mRNA downstream 338769 17473856 ~ 17478791 (-) True AMCG00010183
AMCG00010182 mRNA downstream 343952 17465112 ~ 17473608 (-) True AMCG00010182
AMCG00010180 mRNA downstream 365072 17440183 ~ 17452488 (-) True AMCG00010180
AMCG00010178 mRNA downstream 414053 17395137 ~ 17403507 (-) True AMCG00010178
AMCG00010189 mRNA upstream 1497 17822669 ~ 17825492 (-) True AMCG00010189
AMCG00010188 mRNA upstream 19535 17840707 ~ 17844269 (-) True AMCG00010188
AMCG00010190 mRNA upstream 31721 17852893 ~ 17855821 (-) True AMCG00010190
AMCG00010195 mRNA upstream 253760 18074932 ~ 18111982 (-) True AMCG00010195
AMCG00010196 mRNA upstream 294342 18115514 ~ 18126029 (-) True AMCG00010196
TU96773 other downstream 6088395 11728503 ~ 11729165 (-) True G77544
TU95829 other downstream 10754739 7057805 ~ 7062821 (-) True G76762
TU95819 other downstream 10880492 6936718 ~ 6937068 (-) True G76752
TU95738 other downstream 11148726 6666606 ~ 6668834 (-) False G76684
TU95471 other downstream 11916576 5894675 ~ 5900984 (-) True G76463
TU98065 other upstream 19820 17840992 ~ 17844389 (-) False AMCG00010188
TU98067 other upstream 31695 17852867 ~ 17855730 (-) False AMCG00010190
TU98072 other upstream 124063 17945235 ~ 17945761 (-) True G78610
TU98705 other upstream 3109999 20931171 ~ 20941393 (-) True G79147
TU98765 other upstream 3254769 21075941 ~ 21081825 (-) False AMCG00010247

Expression Profile