RNA id: AMCG00010196


Basic Information

Item Value
RNA id AMCG00010196
length 2177
RNA type mRNA
GC content 0.51
exon number 17
gene id AMCG00010196
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 18115514 ~ 18126029 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTTGAAGATGATGGAATGAAGGTGCGAAATGGGACAGAGGAGTTGGTGCAAGGAAAGACCCTCATCAAACCACCGGACCAACTGGATCTCACTGAAGCAGAGCTGAAAGAGGAGTTCACACGGACCCTGACAGCAAACAACCCCAATGCTCCAGACAACATCGTCCGCTACAGTTTTAAAGAACAGGCATATGTACAAGTCAGTGTTGACCACCTGGCTGTCCACTACTCAGCTGAAGGGAATTTGATTGACAAAGACTCTGATGAAGCCAGGAGACAAAGACCTGAGCAGAGTGTCTCAGAAGAAATGAGCCCTGCCGAGTCCAGCGCAGCAGAGACGGGGGGATGTCAGGCAAGTCAGGCGGCGGGGGATgaagggagagaagaggaggacgAAGACCTCGTGGAACATGCTTAGAGTGCTGAAAGCACATCCAAGCAGAAAGCGAACGCGATCAACATGTTCTACTACGAGAGCGGGTCCCAGACACTGAACCACCCTCCCATGgaaAGAGGATCGCAGACCGAGCCGCCTCCCCGAGCAAACTTCTCAGCCACAGCCAATCAGTGGAAAATCTACGATTCATATGTCGAAGAGCTGGAGAAGCAGGAGAAAAACAAGGAGAAGCAAAAGGCCCCCCATATgagaaaggaggaggaaaaaaccAAGAAATTGATGGTGATCGAGACTCAGAGTGATGACATCACTAAGGTGGGCAAGGTAGCCAAGATCATCGAAAGAATGGTGAACCAGAACACATTTGATGACATTGCACAAGatttcaaatattttgaagatGCTTCTGATGAATTCAGGGGACAAAAGGGCACTCTGCTCCCACTGTGGAAATTCCAGCAGGACGAACCTAAAAGACTGGCAGTGACTTCCCTCTGCTGGAATCCAGCCTATAAAGACCTGTTTGCCGTTGGTTATGGATCCTatgacaTTGACAAGCAGCACGGGGGCAAGCTGCAGCTCTACAGCCTCAAGAACCCCTCTTTCCCAGAGTACAGCTTCCCCACAGACAGTGGCGTGATGTGCCTGGACATCAACCCGCTATGCCCACACCTGGTGGTCGTGGGCTTCTACGATGGCAACGTGGCCGTGTACAATCTGATAGAGAAGCACGAGCAGCCGGCATTCAAGAGCCACAGCAAGTCTGGCAGACACACCGACCCCGTCTGGCAGGTGAAATGGCAGAAGGTTGACTTGGAGGAGCGGCACACATTCTTCTCCGTTTCCGCTGATGGGCGAGTGGTGTCCTGGACTCTTGTGAAGAACGAGCTGGTTTTCACAGATATCATCAGGCTTTCTGGGGAAGGAGCGGTGACGGACAGGCCTCAGGGGCAACAGCTGCAAACCATGGCATGTGGGATCTCGATGGACTTCCACAAACAGAACGACAGCCACTTCCTGGTTGGGACGGAGGAAGGAAAAATACACATGTGTAAGAAAGGCTATTCCAGACATTTCCTGAAGACCTTTGAAGCCAATGATGTGCCCGTGGATGCACTGCGCTGGAACCTTTTCCACCCAGACATCTTCATTTCCTGCAGCATTGATGGGACTGTGAAGATCTGGGACCAGACCGTAAAGACTCCGATGTTCACCTTTGACCTGAACGCCCCTGTGGGAGATGTGGCCTGGTCTCCTTACTCCTCCACCGTCTTTGCTGCCATCACCACAGATGGCAAGGTGCATGTGTTTGACTTGAGTGTCAATAAGTACGAGGCCATCTGTGAGCAGCCCGTGGTGGCCAAGAAGAAGACCAAGCTAACGCACATCGAGTTCAACCCGGTCCACCCCATCATCATTGTGGGAGACGACCGAGGATGCGTCACCAGTCTGAAGCTGTCACCCAACCTGCGCAAGAAGCCCAAGGAGACTCCCAAGGGCCCAGAGTTGGAAATTGCCAAGATAGAGAAACTCCTGAGCTTAGTGAGGGATCCAGACAACTCCAGCAAGAACTGAAGAGGCAGCAAAGAAGCACAGACGAGTCCGACAGGCCATTTGTAAACAACATCTCTGTGTAATTGTGCATTTGGCCTGTCCATTTCTCCAATCAGAATAGGCTGTTAATTGTGATACTATACTGGTTTGCTTGTGTAACGTATATTGGTTGTTCACGTGAATGCAAGCAAATATTTGCCTTGAGTAAGAGGAGTATTTACTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98078 lncRNA downstream 139449 17973503 ~ 17976065 (-) True G78616
TU98077 lncRNA downstream 145673 17969640 ~ 17969841 (-) True G78615
TU98076 lncRNA downstream 146146 17969169 ~ 17969368 (-) True G78614
TU98071 lncRNA downstream 178937 17936122 ~ 17936577 (-) True G78609
TU98061 lncRNA downstream 294342 17817560 ~ 17821172 (-) True G78600
TU98132 lncRNA upstream 51548 18177577 ~ 18183301 (-) True G78661
TU98198 lncRNA upstream 737239 18863268 ~ 18866487 (-) False AMCG00010206
TU98246 lncRNA upstream 845334 18971363 ~ 18971627 (-) True G78761
TU98252 lncRNA upstream 868144 18994173 ~ 18994596 (-) True G78767
TU98261 lncRNA upstream 880187 19006216 ~ 19010234 (-) True G78773
AMCG00010195 mRNA downstream 3532 18074932 ~ 18111982 (-) True AMCG00010195
AMCG00010190 mRNA downstream 259693 17852893 ~ 17855821 (-) True AMCG00010190
AMCG00010188 mRNA downstream 271245 17840707 ~ 17844269 (-) True AMCG00010188
AMCG00010189 mRNA downstream 290022 17822669 ~ 17825492 (-) True AMCG00010189
AMCG00010181 mRNA downstream 621726 17483505 ~ 17493788 (-) True AMCG00010181
AMCG00010205 mRNA upstream 698376 18824405 ~ 18850929 (-) True AMCG00010205
AMCG00010206 mRNA upstream 740094 18866123 ~ 18872082 (-) True AMCG00010206
AMCG00010209 mRNA upstream 757381 18883410 ~ 18903519 (-) True AMCG00010209
AMCG00010208 mRNA upstream 795260 18921289 ~ 18924380 (-) True AMCG00010208
AMCG00010207 mRNA upstream 803503 18929532 ~ 18952982 (-) True AMCG00010207
TU98072 other downstream 169753 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 259784 17852867 ~ 17855730 (-) False AMCG00010190
TU98065 other downstream 271125 17840992 ~ 17844389 (-) False AMCG00010188
TU96773 other downstream 6386349 11728503 ~ 11729165 (-) True G77544
TU95829 other downstream 11052693 7057805 ~ 7062821 (-) True G76762
TU98705 other upstream 2805142 20931171 ~ 20941393 (-) True G79147
TU98765 other upstream 2949912 21075941 ~ 21081825 (-) False AMCG00010247
TU98958 other upstream 3838500 21964529 ~ 21981974 (-) True AMCG00010271
TU99198 other upstream 4956817 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 5233614 23359643 ~ 23364947 (-) True G79601

Expression Profile