RNA id: AMCG00010206


Basic Information

Item Value
RNA id AMCG00010206
length 1926
RNA type mRNA
GC content 0.66
exon number 5
gene id AMCG00010206
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 18863268 ~ 18872082 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTCTGTTTCGTGGGCTGCAGTGGCAGCGAGAGCGAGGGCGCTGGACGGGGGGGGACCggaagagaaggggagaggtGTGGACCCTTGTCCGGCTGTGTCTTGTCAGCCTGGCCGACAACATGAAGGAGCACCAAGCGTCCCGCTCCTCCCTGCACCTCCTGCTGGTGCCACAGCTGCGCCGACTCTGCTTGACGCCCTGCAGCGGCCTGGTCACCACACCTCTGTGCCAGGCCATCGCCCTCCGCTGCCAGGGCTTGCTCTCTCTGGACCTCTCTGGCTGCCAGCGTGTGGCGCCTGCTGCGCTGGCGGAGGTGGTCAGCAGTGTCCCCAGGCTGCGCAGCCTGGCTCTGTCAGGGTGCCAGTGTGACAGGGGCGTCATGGCGGCCATAGGGAGAGGCTGCCCGTCGCTGCAGCACCTGGACGTAACCCGCTGCCAAAGCCTGCCTCCCCGCGCCCTGCTGCACACGGCCTATCTGCCCACAGAGGGGCGCTACACACACAGGCCCCTGCGCAGCCTGCTGGCCACTGATATCGGGCTGGGGGACGGTGGGGGGGACGGCGTGGGCTCGGCTGTTTTCCTCCTCCTGGCCCTACCCAATCTGGAGCGTCTTGAGCATGACAACCTGGGCGAGGCCTGCAGGCTCCTTGACGGGCTGGACTTCTGGGACTGGGATGGGTTCGCAGTCCAGGATGGGTTCCCCACACTGGGGGAGGCACACACTGTCCGGCTGGGCGATGAGGAGAGCCAGGGGGttgagggaggaagaggagagtgggagggaggCTCAGACGGAAAGGGAGACAAAGGAGTGGATGGAGACAGCGGCGGGAAAGAGGGCTGCAGAATTGGGCAGCGGGACCCCAGTGGGCATTTGACTCTGAGGCTGAAGGAGGTGGGGGCGGTGCATTGTGGGGATCTGTATTCTCTGGGGCGGCTGTGCCCGGGCCTGCGGTCACTCTTGGTGCTCTGTGAAGATACGCGGAAGCTAGCCAGGGAGCTGGGCCTGTGGGCTGGCCTGGCCAGTCTCACGGTGCAGTACTCCGGCTCTCTGGTGGAGCTCCTCCCCGCCCTGGAGAGAGGGGGGCACTGGCTGTCCTCACTCTGCCTGCGGGGGCTGCGCATCAACTGCCCCGCCTCCCTCATCGGCCTCCTCCGCTGCTGCCCCTCGCTGCGCAGCCTCGAGCTGCAGCCGCAGTCCCCCCCacagcaggaggaggaagaggagcaagaagaggaggaagaggaccctctgtctcctcctcagAATATTCCACGTCTCCCTCAGCTCCGTGTACTCACTCTCAGcTTTCTCTCTGACGAGCCCCAGAGATGCCCTGCCCTGGTGCCGTGGCTCCTGCAGGGGGTGCTACAGTCTCTGCTGTGCGGTTCCCCCTTGCTAGACAAGGTCCTCTTGTTCGGCCTGCCCTGCAGCATGGACAGGGTTTTCCGGAAGGTTCTGAATGGCAGGCCCGGAACCTCCGGAGTCTCCAGAACCGCCAGTCCCACACCGCTGCAGAACCTCCGGGAGCTCAGCCTGGCCCACTGCCATGTCTCCACAGACACAGCCCAGCGCCTGATCGCTGAGCACAACCGGCTGAGCCTGCTGGACCTCAGCGGCTGCTGGGGGGTGAGCCGGGCGGACTTCACACAGTTACAGAGGCTGGCCAGCAGGAAGAGCCGGGAGCTCTCAGCTCTGACGTGTGAGGTCAAAGGGCCCGTCCTTGCCGAGGCGGCGAGCCTATTGGCCGGAGAGTCCGACGAGCCTCTCGCACACCTCCCAGTCCTTGGTGGCGAGGGCGGGGTCTTGGGCGAGGGGCGCGGGCAGCGTGAGGGAGCAGTCGCTGTCGAAGTACTTCCCCGAGATGCCCTCGACGTCTTCCGACACGGCACAGTAGATGGAGCTGACGGCTCCTTCCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98132 lncRNA downstream 682822 18177577 ~ 18183301 (-) True G78661
TU98078 lncRNA downstream 890058 17973503 ~ 17976065 (-) True G78616
TU98077 lncRNA downstream 896282 17969640 ~ 17969841 (-) True G78615
TU98076 lncRNA downstream 896755 17969169 ~ 17969368 (-) True G78614
TU98071 lncRNA downstream 929546 17936122 ~ 17936577 (-) True G78609
TU98246 lncRNA upstream 99281 18971363 ~ 18971627 (-) True G78761
TU98252 lncRNA upstream 122091 18994173 ~ 18994596 (-) True G78767
TU98261 lncRNA upstream 134134 19006216 ~ 19010234 (-) True G78773
TU98312 lncRNA upstream 268714 19140796 ~ 19141036 (-) True G78815
TU98341 lncRNA upstream 323580 19195662 ~ 19226372 (-) True G78840
AMCG00010205 mRNA downstream 15194 18824405 ~ 18850929 (-) True AMCG00010205
AMCG00010196 mRNA downstream 740094 18115514 ~ 18126029 (-) True AMCG00010196
AMCG00010195 mRNA downstream 754141 18074932 ~ 18111982 (-) True AMCG00010195
AMCG00010190 mRNA downstream 1010302 17852893 ~ 17855821 (-) True AMCG00010190
AMCG00010188 mRNA downstream 1021854 17840707 ~ 17844269 (-) True AMCG00010188
AMCG00010209 mRNA upstream 11328 18883410 ~ 18903519 (-) True AMCG00010209
AMCG00010208 mRNA upstream 49207 18921289 ~ 18924380 (-) True AMCG00010208
AMCG00010207 mRNA upstream 57450 18929532 ~ 18952982 (-) True AMCG00010207
AMCG00010210 mRNA upstream 85486 18957568 ~ 18967841 (-) True AMCG00010210
AMCG00010211 mRNA upstream 145149 19017231 ~ 19052751 (-) True AMCG00010211
TU98072 other downstream 920362 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 1010393 17852867 ~ 17855730 (-) False AMCG00010190
TU98065 other downstream 1021734 17840992 ~ 17844389 (-) False AMCG00010188
TU96773 other downstream 7136958 11728503 ~ 11729165 (-) True G77544
TU95829 other downstream 11803302 7057805 ~ 7062821 (-) True G76762
TU98705 other upstream 2059089 20931171 ~ 20941393 (-) True G79147
TU98765 other upstream 2203859 21075941 ~ 21081825 (-) False AMCG00010247
TU98958 other upstream 3092447 21964529 ~ 21981974 (-) True AMCG00010271
TU99198 other upstream 4210764 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 4487561 23359643 ~ 23364947 (-) True G79601

Expression Profile